MXO03587.5prime Sequence
828 bp (715 high quality bases) assembled on 2007-07-18
> MXO03587.5prime
CAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAGAGCGGAAG
CGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAATGCGAACTT
CTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCCATCGGGTG
CACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCGATGCCAGA
AACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCTCGGGATCT
GATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCAACTGTTGC
TGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTGATGACGAA
GAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGAGTGCACAT
CGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGACGGCACCA
TTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGGGTAACCAC
ATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCATAAGCCGGG
CAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATATGCAGGACC
TCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAATGAAGCAA
GCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGCGGCGACGA
CGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAACAATGCAT
TCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTTCGCTGACC
AACCGACTCGTAGTTGGACGCTCAAATA
MXO03587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6961-PA | 1425 | CG6961-RA | 1..820 | 9..828 | 4100 | 100 | Plus |
| CG18259-PA | 1425 | CG18259-RA | 1..820 | 9..828 | 3975 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6961-RA | 1894 | CG6961-RA | 150..970 | 8..828 | 4105 | 100 | Plus |
| CG18259-RA | 2055 | CG18259-RA | 119..939 | 8..828 | 4030 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18787398..18787918 | 609..89 | 2605 | 100 | Minus |
| X | 23542271 | X | 18782713..18783233 | 609..89 | 2530 | 99 | Minus |
| X | 23542271 | X | 18782437..18782656 | 828..609 | 1100 | 100 | Minus |
| X | 23542271 | X | 18787122..18787341 | 828..609 | 1100 | 100 | Minus |
| X | 23542271 | X | 18783296..18783376 | 88..8 | 405 | 100 | Minus |
| X | 23542271 | X | 18787981..18788061 | 88..8 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:50 has no hits.
MXO03587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:38 Download gff for
MXO03587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-PA | 1..819 | 9..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:34 Download gff for
MXO03587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-RA | 142..969 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:44 Download gff for
MXO03587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6961-RA | 142..969 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:44 Download gff for
MXO03587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18787981..18788064 | 1..88 | 95 | | Minus |
| X | 18787123..18787340 | 610..827 | 100 | <- | Minus |
| X | 18787398..18787918 | 89..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:34 Download gff for
MXO03587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18681156..18681373 | 610..827 | 100 | <- | Minus |
| arm_X | 18681431..18681951 | 89..609 | 100 | <- | Minus |
| arm_X | 18682014..18682097 | 1..88 | 95 | | Minus |
