MXO03591.5prime Sequence
876 bp (658 high quality bases) assembled on 2007-07-18
> MXO03591.5prime
CAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCGGGAATCTT
GACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAGAAGTACGG
TACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGTTCACATGG
AGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACGGTTATACG
CTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGGCGGGCGCC
CAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGACAAGACGC
GGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCGTCGTCGAA
TGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGTGTCGGTGA
TGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGATGGCCAGC
CGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGCCGGGCATG
GGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCATTGGTCGAA
AGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGAGCCGCCAT
CGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTCGTGACCCG
TATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGCATCATGGA
TGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGACTCACGCG
ATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACTTCCCACGC
CGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACCTTAAGCGGC
AGCCTGCGCTCCTGCAGCGTTTCTCG
MXO03591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8597-PB | 1059 | lark-RB | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8597-PA | 1059 | lark-RA | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8597-PC | 1059 | lark-RC | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8597-PE | 1059 | lark-RE | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8597-PD | 1059 | lark-RD | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8597-PB | 1059 | lark-RB | 791..869 | 798..876 | 395 | 100 | Plus |
| CG8597-PA | 1059 | lark-RA | 791..869 | 798..876 | 395 | 100 | Plus |
| CG8597-PC | 1059 | lark-RC | 791..869 | 798..876 | 395 | 100 | Plus |
| CG8597-PE | 1059 | lark-RE | 791..869 | 798..876 | 395 | 100 | Plus |
| CG8597-PD | 1059 | lark-RD | 791..869 | 798..876 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lark-RD | 1758 | CG8597-RD | 276..1145 | 8..876 | 4325 | 99.9 | Plus |
| lark-RE | 2087 | CG8597-RE | 605..1474 | 8..876 | 4325 | 99.9 | Plus |
| lark-RC | 1784 | CG8597-RC | 302..1171 | 8..876 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7340068..7340771 | 8..711 | 3520 | 100 | Plus |
| 3L | 28110227 | 3L | 7340875..7341042 | 710..876 | 790 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 22:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 515..574 | 125 | 69.4 | Plus |
MXO03591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:54 Download gff for
MXO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8597-PA | 1..869 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:35 Download gff for
MXO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 295..1171 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:38 Download gff for
MXO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 295..1171 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:38 Download gff for
MXO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7340061..7340770 | 1..710 | 99 | -> | Plus |
| 3L | 7340876..7341042 | 711..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:35 Download gff for
MXO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7333161..7333870 | 1..710 | 99 | -> | Plus |
| arm_3L | 7333976..7334142 | 711..876 | 99 | | Plus |
