MXO03592.5prime Sequence
884 bp (775 high quality bases) assembled on 2007-07-18
> MXO03592.5prime
CAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCACCGAAGTCA
TCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAAGACTCATC
CGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAACGATCATTC
ACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGGCAGAACTT
ACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCACACACTCAC
CAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTTTCTGCAGA
ACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGAATAGCACG
CTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAGCTTCTTCC
GCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGGACCGCTGC
CGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAACACAAAAAC
AAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGACAGGAATC
CACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAAGCACAAGA
AGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCAAAAAGGAG
AAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTGGGCTTGCT
GCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGGAGCCACTA
GTCTGGGATCGCTGGGAGGAGGACCTGCAGGACCCGGGCTGTCCAGCCTT
AGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGCTTCTCCTC
ATCGATGCAGATGCAGCAGCAACAGCAGATGCCC
MXO03592.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5546-PA | 1014 | MED19-RA | 1..876 | 9..884 | 4355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED19-RB | 1853 | CG5546-RB | 311..1186 | 9..884 | 4365 | 99.9 | Plus |
| MED19-RA | 1763 | CG5546-RA | 311..1186 | 9..884 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17845754..17846191 | 446..9 | 2190 | 100 | Minus |
| 3L | 28110227 | 3L | 17844392..17844715 | 884..561 | 1605 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17844780..17844895 | 561..446 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:29 has no hits.
MXO03592.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:00 Download gff for
MXO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5546-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:35 Download gff for
MXO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 311..1186 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:29 Download gff for
MXO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 311..1186 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:29 Download gff for
MXO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17844392..17844714 | 562..884 | 99 | <- | Minus |
| 3L | 17844780..17844894 | 447..561 | 100 | <- | Minus |
| 3L | 17845754..17846191 | 9..446 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:35 Download gff for
MXO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17837492..17837814 | 562..884 | 99 | <- | Minus |
| arm_3L | 17837880..17837994 | 447..561 | 100 | <- | Minus |
| arm_3L | 17838854..17839291 | 9..446 | 100 | | Minus |
