MXO03594.5prime Sequence
836 bp (731 high quality bases) assembled on 2007-07-18
> MXO03594.5prime
CAGTCGACATGACCATGCTGACCACTGCATCTGCGATGAGGTGCCTGCCC
TCTGAATTCCCACTTGGAGTACCCACCATGCTGTCGGACATCGACCAACT
GCCCACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTTGGGCGAGC
CGACTGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCGAAACACCC
GAGCGCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTAGAAGCGGA
GACGGACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGATCAGATACC
TGCGGCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGATTAAGCGG
TACTACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGACCTGAAGCC
ATCGAACGAGGCCAACATCTTCAAGCACAACATCCTTACCGTCTTCCCCA
ACCGAGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGGGCAAGCGC
TGGAAGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGAGCTGTGCT
CTTCCTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTGCGGAGCCG
TTGTGATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGTGGCAGTTT
ACGCCTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGACTCGGTGCC
GCTCCGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGATTTTCCAGG
TGGTCTTTGCCCTGTTCAAGCCCTTCCTCAAGGAGAAGCTGCGCAGCAGG
ATCATCTTCCATGGCACCGATCGCGAGTCCCTGCAC
MXO03594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-PB | 975 | CG10237-RB | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG10237-PC | 921 | CG10237-RC | 5..774 | 67..836 | 3850 | 100 | Plus |
| CG10237-PA | 906 | CG10237-RA | 1..759 | 78..836 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 1457 | CG10237-RB | 182..1014 | 4..836 | 4150 | 99.9 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 507..1277 | 66..836 | 3855 | 100 | Plus |
| CG10237-RA | 1338 | CG10237-RA | 125..895 | 66..836 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436293..19436633 | 836..496 | 1705 | 100 | Minus |
| 2L | 23513712 | 2L | 19437666..19437846 | 246..66 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 495..341 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 341..245 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 19440663..19440726 | 67..4 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:53 has no hits.
MXO03594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:06 Download gff for
MXO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-PB | 1..828 | 9..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:35 Download gff for
MXO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..1014 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:47 Download gff for
MXO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..1014 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:47 Download gff for
MXO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19436293..19436633 | 496..836 | 100 | <- | Minus |
| 2L | 19436810..19436963 | 342..495 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 247..341 | 100 | <- | Minus |
| 2L | 19437666..19437845 | 67..246 | 100 | <- | Minus |
| 2L | 19440664..19440728 | 1..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:35 Download gff for
MXO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19437666..19437845 | 67..246 | 100 | <- | Minus |
| arm_2L | 19440664..19440728 | 1..66 | 96 | | Minus |
| arm_2L | 19436293..19436633 | 496..836 | 100 | <- | Minus |
| arm_2L | 19436810..19436963 | 342..495 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 247..341 | 100 | <- | Minus |
