MXO03601.5prime Sequence
897 bp (815 high quality bases) assembled on 2007-06-27
> MXO03601.5prime
CAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACAACCCGTGG
AACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAGTTTACGTT
CGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCTGGGAGAAG
CCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCGAGGGCAAG
ACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTACTTTAAGAT
CCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGAACTACCGC
CTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTAATCTACCC
TCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATCAAGGTGAC
GCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGCGTTCACAG
TAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGGAGCCATTC
AAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGCTCAGGACC
GCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTCGGGGCAGG
TGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAAATCTTACG
GCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACAAACCAGCC
ACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTTAAGTGTTG
GCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAATGGAGATT
CCGGCGCTGCCACCGACAACCTCCTCAACTGCGGGATTATCGCTTTGGAC
TACGACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCGCAATCT
MXO03601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1105-PA | 1269 | CG1105-RA | 1..809 | 9..817 | 4045 | 100 | Plus |
| CG1105-PA | 1269 | CG1105-RA | 810..890 | 817..897 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1105-RA | 1796 | CG1105-RA | 97..988 | 7..897 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7065102..7065720 | 897..280 | 3045 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7066141..7066299 | 280..122 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 7066921..7067040 | 126..7 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:31 has no hits.
MXO03601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:24 Download gff for
MXO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-PA | 1..890 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:54 Download gff for
MXO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-RA | 92..988 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:38 Download gff for
MXO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-RA | 92..988 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:38 Download gff for
MXO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7065102..7065720 | 280..897 | 99 | <- | Minus |
| 3R | 7066142..7066297 | 124..279 | 100 | <- | Minus |
| 3R | 7066924..7067043 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:54 Download gff for
MXO03601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2890824..2891442 | 280..897 | 99 | <- | Minus |
| arm_3R | 2891864..2892019 | 124..279 | 100 | <- | Minus |
| arm_3R | 2892646..2892765 | 1..123 | 96 | | Minus |
