MXO03603.5prime Sequence
774 bp (760 high quality bases) assembled on 2007-06-27
> MXO03603.5prime
CAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACGAGGTGTTT
GAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAAGCCTCGCG
GAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGACGAGGAAA
ATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGGTTCAGCCG
GAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAACCTCTGGC
GCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAAGCAGCAGA
ATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAACCATGTGG
GAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGGCACGAGCA
GGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCACCAGCTGT
CCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAGTAGCTACC
AATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTCGAGGATCT
GCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCAGATACAGC
TCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAACAGTGCAAT
AAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGCAGCAACGA
GTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGGTATATCCA
TGAACTCAGCAAGCTTTCTAGACC
MXO03603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12104-PA | 753 | CG12104-RA | 1..750 | 9..758 | 3700 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12104-RB | 1398 | CG12104-RB | 103..853 | 8..758 | 3725 | 99.7 | Plus |
| CG12104-RA | 1182 | CG12104-RA | 103..853 | 8..758 | 3725 | 99.7 | Plus |
| CG12104-RC | 1029 | CG12104-RC | 38..700 | 96..758 | 3285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1601271..1601933 | 758..96 | 3285 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1602485..1602572 | 95..8 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:07 has no hits.
MXO03603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:38 Download gff for
MXO03603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12104-PA | 1..753 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:39 Download gff for
MXO03603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12104-RA | 97..858 | 1..765 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:18 Download gff for
MXO03603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12104-RA | 97..858 | 1..765 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:18 Download gff for
MXO03603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1601266..1601933 | 96..765 | 99 | <- | Minus |
| 3L | 1602485..1602577 | 1..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:39 Download gff for
MXO03603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1601266..1601933 | 96..765 | 99 | <- | Minus |
| arm_3L | 1602485..1602577 | 1..95 | 96 | | Minus |
