MXO03605.5prime Sequence
825 bp (804 high quality bases) assembled on 2007-06-27
> MXO03605.5prime
CAGTCGACATGCCTTCACACACATGCACACCGACACGGGGACACTCACAC
AACGAAACCACACACACACACACACACACACAAACACTCACACACACACA
CACAAACACTCTCACACACACACATAAACACAAACACGTACAGATGATGA
ATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCACTGCCAGC
GAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACGATCCTGCA
AACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTACAGTAGAAG
AGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCGAGGTGGCC
GCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTTACGATCAA
GGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAAGGCCCAGA
CCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGGCCAATCGA
GATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATGGATGTGAA
ATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTACAAGCTGC
AGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCGAATCGCAG
TTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATCCGTAACGA
GGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGAGATTGAGT
CGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAGTCAAGCTG
CCCGCCGAGGCCGAGGNCTTCCGCC
MXO03605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32593-PC | 1206 | Flo-2-RC | 1..817 | 9..825 | 4066 | 99.8 | Plus |
| CG32593-PA | 1317 | Flo-2-RA | 275..928 | 172..825 | 3251 | 99.8 | Plus |
| CG32593-PB | 1278 | Flo-2-RB | 236..889 | 172..825 | 3251 | 99.8 | Plus |
| CG32593-PE | 1317 | Flo-2-RE | 275..928 | 172..825 | 3251 | 99.8 | Plus |
| CG32593-PF | 1278 | Flo-2-RF | 236..889 | 172..825 | 3251 | 99.8 | Plus |
| CG32593-PD | 846 | Flo-2-RD | 1..457 | 369..825 | 2266 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo2-RM | 2602 | CG32593-RM | 611..1427 | 9..825 | 4074 | 99.9 | Plus |
| Flo2-RJ | 3212 | CG32593-RJ | 421..1104 | 142..825 | 3409 | 99.9 | Plus |
| Flo2-RI | 2240 | CG32593-RI | 382..1065 | 142..825 | 3409 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14930746..14931289 | 282..825 | 2709 | 99.8 | Plus |
| X | 23542271 | X | 14926601..14926875 | 9..283 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:41:56 has no hits.
MXO03605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:46 Download gff for
MXO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32593-PC | 1..817 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:35 Download gff for
MXO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-2-RC | 611..1427 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:24 Download gff for
MXO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo2-RM | 611..1427 | 9..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:24 Download gff for
MXO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14926601..14926874 | 9..282 | 100 | -> | Plus |
| X | 14930747..14931289 | 283..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:35 Download gff for
MXO03605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14820634..14820907 | 9..282 | 100 | -> | Plus |
| arm_X | 14824780..14825322 | 283..825 | 99 | | Plus |
