MXO03606.5prime Sequence
477 bp (477 high quality bases) assembled on 2007-06-27
> MXO03606.5prime
CAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCGGTAATCCC
ACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAGGTCTTCAT
CCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATACACGGCTGC
CCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGGCCACCATC
AATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCCTGCGGCAC
CTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGATCTATATGT
GCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCAAATTTGTG
GCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCATCTGATCCA
TCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATTCGATCGTC
CGGGGCGAACGGCAAGCTTTCTAGACC
MXO03606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-27 15:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5447-PA | 456 | CG5447-RA | 1..453 | 9..461 | 2215 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5447-RB | 1392 | CG5447-RB | 130..584 | 7..461 | 2245 | 99.6 | Plus |
| CG5447-RA | 1392 | CG5447-RA | 130..584 | 7..461 | 2245 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26452859..26453022 | 7..170 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 26453088..26453241 | 170..323 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 26453567..26453706 | 322..461 | 670 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:20 has no hits.
MXO03606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-27 15:28:24 Download gff for
MXO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-PA | 1..456 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:53 Download gff for
MXO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-RA | 125..590 | 1..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:48 Download gff for
MXO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-RA | 125..590 | 1..469 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:48 Download gff for
MXO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26453089..26453241 | 171..323 | 100 | -> | Plus |
| 3R | 26453569..26453712 | 324..469 | 95 | | Plus |
| 3R | 26452854..26453022 | 1..170 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:53 Download gff for
MXO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22278576..22278744 | 1..170 | 98 | -> | Plus |
| arm_3R | 22278811..22278963 | 171..323 | 100 | -> | Plus |
| arm_3R | 22279291..22279434 | 324..469 | 95 | | Plus |
