MXO03607.5prime Sequence
784 bp (652 high quality bases) assembled on 2007-06-27
> MXO03607.5prime
CAGTCGACATGTTTAGGATCCACCTCACGATGGGTCCCCAACGCAACCAG
CTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGCAGCACCGG
AAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCATGTCCACA
CGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACATATTGGCG
CTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATGGACGAACT
GGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACCGGCCCTAC
CCACGCCCCTTAACAAGGTCGAACCGCCCTACGCCTACCGTGACCACTCC
CTCAACTATCAAAACTTCGATATGGGCGGACTGGTGTGCACCTGCCTGAT
AGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAAACCCTCCC
ACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTATTACAACT
CTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCACAGCATCAT
TGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGAACTACCAC
CTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCATTGTGTTT
CTAAAGGCCTATTGCATTGATATCGTTTGGCGCTGCTACAAGTACTTGAC
GCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGAGCCACCGA
CTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGC
MXO03607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-PA | 1287 | CG14767-RA | 1..776 | 9..784 | 3755 | 99.3 | Plus |
| CG14767-PC | 1299 | CG14767-RC | 367..788 | 363..784 | 2060 | 99.5 | Plus |
| CG14767-PB | 1299 | CG14767-RB | 367..788 | 363..784 | 2060 | 99.5 | Plus |
| CG14767-PC | 1299 | CG14767-RC | 1..352 | 9..360 | 1710 | 99.4 | Plus |
| CG14767-PB | 1299 | CG14767-RB | 1..352 | 9..360 | 1710 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 2120 | CG14767-RA | 157..932 | 9..784 | 3805 | 99.4 | Plus |
| CG14767-RB | 2043 | CG14767-RB | 68..855 | 9..784 | 3680 | 98 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..944 | 9..784 | 3680 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8719205..8719489 | 784..500 | 1410 | 99.6 | Minus |
| 2R | 25286936 | 2R | 8719855..8720033 | 360..182 | 880 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 182..9 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8719646..8719782 | 499..363 | 670 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 36..110 | 127 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..196 | 35..94 | 122 | 68.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9226 | 35..94 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6914 | 39..131 | 114 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6839 | 39..128 | 110 | 59.3 | Plus |
MXO03607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:59 Download gff for
MXO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-PA | 1..776 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:52 Download gff for
MXO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 151..932 | 1..784 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:19 Download gff for
MXO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 151..932 | 1..784 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:19 Download gff for
MXO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719205..8719489 | 500..784 | 99 | <- | Minus |
| 2R | 8719646..8719784 | 361..499 | 98 | <- | Minus |
| 2R | 8719855..8720032 | 183..360 | 99 | <- | Minus |
| 2R | 8723257..8723436 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:52 Download gff for
MXO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606710..4606994 | 500..784 | 99 | <- | Minus |
| arm_2R | 4607151..4607289 | 361..499 | 98 | <- | Minus |
| arm_2R | 4607360..4607537 | 183..360 | 99 | <- | Minus |
| arm_2R | 4610762..4610941 | 1..182 | 97 | | Minus |
