MXO03608.5prime Sequence
830 bp (676 high quality bases) assembled on 2007-06-27
> MXO03608.5prime
CAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGGCAGAGGTG
GCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCGAAGATCGA
GGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGCGCGGACCG
ACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGGACGTAGAG
GAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCAAAGGAAAG
AGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGAACTGGCTC
GTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTGGTGGCCCC
CGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAGCACAGTGT
CAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGAGATCAACA
CGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCGACTTCACC
AAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATGTTCAAGCG
GATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGTGGCCACGC
ACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGACTGGTTCGG
AATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACCGTCGCGTC
TCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAATGGGCGGCG
ATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCCAGCTGCTA
AGCTTTTCCCCGTACTTCACGGAAGACGAG
MXO03608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1902-PA | 939 | CG1902-RA | 1..822 | 9..830 | 4110 | 100 | Plus |
| CG1902-PC | 939 | CG1902-RC | 1..822 | 9..830 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1902-RC | 1782 | CG1902-RC | 161..983 | 8..830 | 4115 | 100 | Plus |
| CG1902-RA | 1749 | CG1902-RA | 128..950 | 8..830 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9604244..9604611 | 307..674 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 9603881..9604180 | 8..307 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 9604669..9604825 | 674..830 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:18 has no hits.
MXO03608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:07 Download gff for
MXO03608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-PC | 1..822 | 9..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:54 Download gff for
MXO03608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..950 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:21 Download gff for
MXO03608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..950 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:21 Download gff for
MXO03608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9603874..9604180 | 1..307 | 99 | -> | Plus |
| 2R | 9604245..9604611 | 308..674 | 100 | -> | Plus |
| 2R | 9604670..9604825 | 675..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:54 Download gff for
MXO03608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5491379..5491685 | 1..307 | 99 | -> | Plus |
| arm_2R | 5491750..5492116 | 308..674 | 100 | -> | Plus |
| arm_2R | 5492175..5492330 | 675..830 | 100 | | Plus |
