MXO03609.5prime Sequence
829 bp (690 high quality bases) assembled on 2007-06-27
> MXO03609.5prime
CAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCAACTACGAA
GATATGCGCAACTCTGGGCCGGCCAGCTCCACGGAGTACATGGTCAACAT
GGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCCCGGCACGA
CGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCAAGGGCTGC
ATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATCATCACATC
GCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTACGAGCGGG
CGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTGGTCCCGGC
ATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTGGACCTGCG
CACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAAGGATTCCG
TGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTGATCCCCTT
TATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGCCTCCTGGC
GGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTCCGAACTGC
TAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGTTGGACGAG
GCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATCAAGGATGT
CTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGCGGAGGCAG
CTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAAAAGAAGTCC
GCCACAGCGCTCAAGGAAGCATCCGAAGT
MXO03609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7635-PA | 1053 | Mec2-RA | 1..818 | 9..826 | 3915 | 99.1 | Plus |
| CG33253-PA | 1104 | CG33253-RA | 650..704 | 643..697 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mec2-RA | 1238 | CG7635-RA | 81..898 | 9..826 | 3985 | 99.1 | Plus |
| CG33253-RB | 1733 | CG33253-RB | 392..930 | 264..799 | 885 | 78 | Plus |
| CG33253-RC | 2410 | CG33253-RC | 1069..1607 | 264..799 | 885 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19189034..19189547 | 178..691 | 2540 | 99.6 | Plus |
| X | 23542271 | X | 19188115..19188283 | 9..177 | 800 | 98.2 | Plus |
| X | 23542271 | X | 19185776..19186206 | 264..691 | 665 | 77.5 | Plus |
| X | 23542271 | X | 19189640..19189774 | 692..826 | 645 | 98.5 | Plus |
| X | 23542271 | X | 19186278..19186385 | 692..799 | 195 | 78.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:09 has no hits.
MXO03609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:13 Download gff for
MXO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7635-PA | 1..821 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:53 Download gff for
MXO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mec2-RA | 76..901 | 1..829 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:23 Download gff for
MXO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mec2-RA | 76..901 | 1..829 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:23 Download gff for
MXO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19188110..19188283 | 1..177 | 96 | -> | Plus |
| X | 19189034..19189547 | 178..691 | 99 | -> | Plus |
| X | 19189640..19189777 | 692..829 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:53 Download gff for
MXO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19082143..19082316 | 1..177 | 96 | -> | Plus |
| arm_X | 19083067..19083580 | 178..691 | 99 | -> | Plus |
| arm_X | 19083673..19083810 | 692..829 | 97 | | Plus |
