MXO03610.5prime Sequence
851 bp (788 high quality bases) assembled on 2007-06-27
> MXO03610.5prime
CAGTCGACATGCCCGTGAAAAGAGTGAATCGCCAGCAGAGCCAAACGCCC
GCCCAACAACTGCAATTGCAGCAGCAGCGGGACGGGGAGAATGGGCTCTA
TCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCCGCAAACGC
TGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATCAGACGAAC
AGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTTGACAAGCA
CGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAAGGAACTGA
TCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCGACCAGATC
CTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGTACTTCGAGGAATT
CTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACATGCTGACCC
GCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGGGCGATGAG
CCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCGCCGCTCAC
CATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGTGGACGTCA
TACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCGAGAGCACA
AGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAGCGCTATGA
GGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCATCATGCATC
TGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCCTGGAGCTG
GTGCATCACTGGTGGCGCGTGGGTCTGTTCTACCTGGCTGGCGGGTTAAC
C
MXO03610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1697-PB | 1254 | rho-4-RB | 1..835 | 9..843 | 4050 | 99.4 | Plus |
| CG1697-PA | 1254 | rho-4-RA | 1..835 | 9..843 | 4050 | 99.4 | Plus |
| CG1697-PC | 855 | rho-4-RC | 1..436 | 408..843 | 2155 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-4-RB | 2345 | CG1697-RB | 250..1089 | 9..848 | 4110 | 99.3 | Plus |
| rho-4-RA | 2057 | CG1697-RA | 250..1089 | 9..848 | 4110 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11604310..11604674 | 247..611 | 1810 | 99.7 | Plus |
| X | 23542271 | X | 11604736..11604973 | 611..848 | 1160 | 99.2 | Plus |
| X | 23542271 | X | 11600087..11600326 | 9..248 | 1155 | 98.8 | Plus |
| X | 23542271 | X | 11589621..11589726 | 9..114 | 410 | 92.5 | Plus |
| X | 23542271 | X | 11591714..11591819 | 9..114 | 410 | 92.5 | Plus |
| X | 23542271 | X | 11595900..11596005 | 9..114 | 410 | 92.5 | Plus |
| X | 23542271 | X | 11593807..11593912 | 9..114 | 395 | 91.5 | Plus |
| X | 23542271 | X | 11597993..11598098 | 9..114 | 395 | 91.5 | Plus |
| X | 23542271 | X | 11587528..11587633 | 9..114 | 395 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:45 has no hits.
MXO03610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:20 Download gff for
MXO03610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1697-PA | 1..843 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:39 Download gff for
MXO03610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1092 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:06 Download gff for
MXO03610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1092 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:06 Download gff for
MXO03610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11600087..11600326 | 9..248 | 98 | -> | Plus |
| X | 11604312..11604673 | 249..610 | 99 | -> | Plus |
| X | 11604736..11604976 | 611..851 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:39 Download gff for
MXO03610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11494120..11494359 | 9..248 | 98 | -> | Plus |
| arm_X | 11498345..11498706 | 249..610 | 99 | -> | Plus |
| arm_X | 11498769..11499009 | 611..851 | 98 | | Plus |
