MXO03611.5prime Sequence
829 bp (802 high quality bases) assembled on 2007-06-27
> MXO03611.5prime
CAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGGTGAAGCAC
GATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGCGACATTGA
GCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCATCAAGAGCA
TCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGCTGACTGGA
ATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGGGATTTGGC
CGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGTTGCCCGAT
GCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATATCATCAAT
GTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCGGTGGCCCC
TACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAACAAGTACC
AGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTACCATGATG
CAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGCGGCTGCAA
GGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACTGCTGCACC
CGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTGTGCTACTG
TTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCCGTTGCCAA
CCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCTGGTGCAAA
AGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCGAAATGGCG
CGTTCCAAAAAGGCTTGTCTCATCTTCTT
MXO03611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1341-PA | 1302 | Rpt1-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt1-RA | 1515 | CG1341-RA | 118..938 | 9..829 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7653017..7653837 | 829..9 | 4105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:59 has no hits.
MXO03611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:28 Download gff for
MXO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1341-PA | 1..821 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:38 Download gff for
MXO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt1-RA | 118..938 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:27 Download gff for
MXO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt1-RA | 118..938 | 9..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:27 Download gff for
MXO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7653017..7653837 | 9..829 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:38 Download gff for
MXO03611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3540522..3541342 | 9..829 | 100 | | Minus |
