MXO03612.5prime Sequence
561 bp (561 high quality bases) assembled on 2007-06-27
> MXO03612.5prime
CAGTCGACATGGAGGCCCTAGTGAATCATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGTAAAGA
CTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATATACCAAATA
CCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTATCTGGGTT
GGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGCCGCAAAGG
GCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACAGAGGCAGG
CAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAATGTAGCAAG
CTTTCTAGACC
MXO03612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-PA | 540 | CG6340-RA | 1..537 | 9..545 | 2660 | 99.8 | Plus |
| CG6340-PB | 1542 | CG6340-RB | 1..286 | 9..294 | 1405 | 99.6 | Plus |
| CG6340-PC | 324 | CG6340-RC | 1..285 | 9..293 | 1400 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-RA | 1346 | CG6340-RA | 102..638 | 9..545 | 2670 | 99.8 | Plus |
| CG6340-RB | 1814 | CG6340-RB | 102..387 | 9..294 | 1415 | 99.7 | Plus |
| CG6340-RF | 2177 | CG6340-RF | 102..386 | 9..293 | 1410 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15483198..15483672 | 71..545 | 2375 | 100 | Plus |
| X | 23542271 | X | 15482475..15482538 | 9..72 | 305 | 98.4 | Plus |
| X | 23542271 | X | 15482855..15482974 | 86..205 | 305 | 87 | Plus |
Blast to na_te.dros performed 2014-11-28 21:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 123..277 | 124 | 58.6 | Plus |
MXO03612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:35 Download gff for
MXO03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-PA | 1..540 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:33 Download gff for
MXO03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RA | 96..638 | 1..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:33 Download gff for
MXO03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RA | 96..638 | 1..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:33 Download gff for
MXO03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15482469..15482537 | 1..71 | 92 | -> | Plus |
| X | 15483199..15483672 | 72..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:33 Download gff for
MXO03612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15376502..15376570 | 1..71 | 92 | -> | Plus |
| arm_X | 15377232..15377705 | 72..545 | 100 | | Plus |
