MXO03613.5prime Sequence
888 bp (807 high quality bases) assembled on 2007-06-27
> MXO03613.5prime
CAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCAACAATAAT
AGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAACAACAGCCA
CAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAGTCATATAC
AAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTCTTCTGTTA
TTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGTGCCAATCA
GAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATGTGACGAAG
TGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCGGACGGACG
CCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGATATAGAAAC
ACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAATGGACGCG
ACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGAACGTTACC
TGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTACATGCAAAT
ACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTTCCAGGAGG
CCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAGTGCTGCTG
CACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATCGCCTACGT
CATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCTGGTGAAAG
TGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCCAGCTGCTG
GAGCTGGAGCAGAATTTGCGCAAGAGCGGAGTCCTGGCGCCCGCAACCCC
GCACCTGAATAGTCCTAGCAATCCTTCGTCATCTTCTG
MXO03613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7850-PA | 1431 | puc-RA | 1..880 | 9..888 | 4375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| puc-RA | 2919 | CG7850-RA | 530..1409 | 9..888 | 4385 | 99.9 | Plus |
| puc-RB | 2407 | CG7850-RB | 252..897 | 243..888 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8120511..8120784 | 615..888 | 1370 | 100 | Plus |
| 3R | 32079331 | 3R | 8105861..8106095 | 9..243 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 8111076..8111301 | 390..615 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 8108231..8108378 | 243..390 | 725 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:31 has no hits.
MXO03613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:43 Download gff for
MXO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7850-PA | 1..880 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:00 Download gff for
MXO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1409 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:53 Download gff for
MXO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1409 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:53 Download gff for
MXO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8105854..8106095 | 1..243 | 98 | -> | Plus |
| 3R | 8108232..8108378 | 244..390 | 99 | -> | Plus |
| 3R | 8111077..8111301 | 391..615 | 100 | -> | Plus |
| 3R | 8120512..8120784 | 616..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:00 Download gff for
MXO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3931576..3931817 | 1..243 | 98 | -> | Plus |
| arm_3R | 3933954..3934100 | 244..390 | 99 | -> | Plus |
| arm_3R | 3936799..3937023 | 391..615 | 100 | -> | Plus |
| arm_3R | 3946234..3946506 | 616..888 | 100 | | Plus |
