MXO03614.5prime Sequence
609 bp (495 high quality bases) assembled on 2007-06-27
> MXO03614.5prime
CAATCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCGGATGCTTT
GGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACGATCAAAGT
TTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCAACAGATCT
ACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGTTCTTCCCG
TTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATCTATGGAAA
CCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCAGCGGGAGC
AGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGGGATTCGTG
CAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGCCTGCACAC
AGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGACCGCCTTTG
GCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGCTCTATCGC
GGCCTTTTGCCCATGATGTGCCGCGACGTCATGCCCTATGGAATCTATAT
GCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGACTTTGTGC
GCCGGCGAC
MXO03614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5646-PA | 912 | CG5646-RA | 1..601 | 9..609 | 2855 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5646-RA | 1273 | CG5646-RA | 99..700 | 8..609 | 2920 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27560274..27560515 | 408..167 | 1180 | 99.2 | Minus |
| 3R | 32079331 | 3R | 27560761..27560876 | 169..54 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27560100..27560214 | 523..409 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27559952..27560038 | 609..523 | 420 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27561172..27561221 | 57..8 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:32 has no hits.
MXO03614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:50 Download gff for
MXO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-PA | 1..601 | 9..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:03 Download gff for
MXO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..700 | 1..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:41 Download gff for
MXO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..700 | 1..609 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:41 Download gff for
MXO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27559952..27560037 | 524..609 | 98 | <- | Minus |
| 3R | 27560100..27560214 | 409..523 | 99 | <- | Minus |
| 3R | 27560274..27560514 | 168..408 | 99 | <- | Minus |
| 3R | 27560763..27560875 | 55..167 | 99 | <- | Minus |
| 3R | 27561175..27561225 | 1..54 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:03 Download gff for
MXO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23385996..23386236 | 168..408 | 99 | <- | Minus |
| arm_3R | 23385674..23385759 | 524..609 | 98 | <- | Minus |
| arm_3R | 23385822..23385936 | 409..523 | 99 | <- | Minus |
| arm_3R | 23386485..23386597 | 55..167 | 99 | <- | Minus |
| arm_3R | 23386897..23386947 | 1..54 | 92 | | Minus |
