MXO03615.5prime Sequence
531 bp (531 high quality bases) assembled on 2007-06-27
> MXO03615.5prime
CAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTCGATCTAC
GAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGGAAAAGTA
CAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGCGGCCTGA
CCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTACGGCGAG
CGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGTCCCAGAT
GCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGACTCCAAGG
CTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGACAATGCG
GCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCCTGGGCAG
CGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAGGGCGTGC
CCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCGCCAAGGAC
ATTGAAAAGCTGCTGGCAAGCTTTCTAGACC
MXO03615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12013-PC | 597 | PHGPx-RC | 83..594 | 4..515 | 2560 | 100 | Plus |
| CG12013-PD | 717 | PHGPx-RD | 203..714 | 4..515 | 2560 | 100 | Plus |
| CG12013-PB | 510 | PHGPx-RB | 1..507 | 9..515 | 2535 | 100 | Plus |
| CG12013-PA | 510 | PHGPx-RA | 1..507 | 9..515 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RD | 1014 | CG12013-RD | 316..827 | 4..515 | 2560 | 100 | Plus |
| PHGPx-RA | 803 | CG12013-RA | 105..616 | 4..515 | 2560 | 100 | Plus |
| PHGPx-RC | 1148 | CG12013-RC | 450..961 | 4..515 | 2560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3327861..3328185 | 4..328 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 3328249..3328439 | 325..515 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:21 has no hits.
MXO03615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:40:57 Download gff for
MXO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12013-PD | 201..717 | 1..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:50 Download gff for
MXO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RC | 446..961 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:42 Download gff for
MXO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RC | 446..961 | 1..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:42 Download gff for
MXO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3327857..3328183 | 1..326 | 99 | -> | Plus |
| 3L | 3328251..3328439 | 327..515 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:50 Download gff for
MXO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3327857..3328183 | 1..326 | 99 | -> | Plus |
| arm_3L | 3328251..3328439 | 327..515 | 100 | | Plus |
