MXO03616.5prime Sequence
789 bp (739 high quality bases) assembled on 2007-06-27
> MXO03616.5prime
CAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATGGGGGACCA
ACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGATGTCTCAAT
CGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATTTTTAGTCA
TCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGACAGTCACA
TTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTGGGATCCGC
GTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGCCTTCTCAC
GCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCATGCATGTC
AATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCGCCGGATAT
AGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACATGAGTGCCA
ACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCCTGACCGTT
GCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGTGGACAGTA
CCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTCGCTGGCCT
CGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGATATGGGGCC
TATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACGGTGGGCTA
TCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGAAGGCGGAC
GCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCT
MXO03616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4482-PD | 1425 | mol-RD | 1..781 | 9..789 | 3905 | 100 | Plus |
| CG4482-PC | 1425 | mol-RC | 1..781 | 9..789 | 3905 | 100 | Plus |
| CG4482-PA | 1425 | mol-RA | 1..781 | 9..789 | 3905 | 100 | Plus |
| CG4482-PE | 1092 | mol-RE | 1..448 | 342..789 | 2240 | 100 | Plus |
| CG4482-PB | 1092 | mol-RB | 1..448 | 342..789 | 2240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mol-RF | 2073 | CG4482-RF | 79..860 | 8..789 | 3910 | 100 | Plus |
| mol-RD | 3012 | CG4482-RD | 1018..1799 | 8..789 | 3910 | 100 | Plus |
| mol-RC | 2455 | CG4482-RC | 461..1242 | 8..789 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14977224..14977647 | 789..366 | 2120 | 100 | Minus |
| 2L | 23513712 | 2L | 14992307..14992472 | 173..8 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 14983950..14984084 | 366..232 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 14984196..14984256 | 231..171 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:38 has no hits.
MXO03616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:04 Download gff for
MXO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4482-PA | 1..781 | 9..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:04 Download gff for
MXO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mol-RC | 454..1242 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:46 Download gff for
MXO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mol-RC | 454..1242 | 1..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:46 Download gff for
MXO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14977224..14977646 | 367..789 | 100 | <- | Minus |
| 2L | 14983950..14984084 | 232..366 | 100 | <- | Minus |
| 2L | 14984196..14984253 | 174..231 | 100 | <- | Minus |
| 2L | 14992307..14992475 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:04 Download gff for
MXO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14977224..14977646 | 367..789 | 100 | <- | Minus |
| arm_2L | 14983950..14984084 | 232..366 | 100 | <- | Minus |
| arm_2L | 14984196..14984253 | 174..231 | 100 | <- | Minus |
| arm_2L | 14992307..14992475 | 1..173 | 97 | | Minus |
