MXO03617.5prime Sequence
860 bp (679 high quality bases) assembled on 2007-06-27
> MXO03617.5prime
CAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGCCGGCCGTC
AATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCCACGGCCCC
GCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGCCATCAAGT
CCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCCTGCCGGTC
ATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACACTGACCAC
CAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACATCTGCTGG
GCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCTCCGTGCAG
CTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGCGAACAGCG
ACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACAGGGCGATA
CGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCAACTACGCC
ACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGTCTGCTGGA
GAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGAGGGTGCAC
CCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATCTGGCCGCC
CAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTGATTGGTTT
CGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCACGCCCATC
CGGACAAGGTGGGCGCCCTGGGCCTGATCAATTGCGTGTCCACGCAGTCG
GGCTGGATCGAGTGGGGCTACCAAAGCTTCAATGCCCGCCTCTTGCGCAC
AAAGGGCATG
MXO03617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15669-PB | 1278 | MESK2-RB | 1..852 | 9..860 | 4160 | 99.5 | Plus |
| CG15669-PA | 1344 | MESK2-RA | 1..852 | 9..860 | 4160 | 99.5 | Plus |
| CG15669-PF | 1344 | MESK2-RF | 1..852 | 9..860 | 4160 | 99.5 | Plus |
| CG15669-PE | 1344 | MESK2-RE | 1..852 | 9..860 | 4160 | 99.5 | Plus |
| CG15669-PC | 1314 | MESK2-RC | 1..852 | 9..860 | 4160 | 99.5 | Plus |
| CG15669-PD | 1098 | MESK2-RD | 1..606 | 255..860 | 2930 | 99.3 | Plus |
| CG15669-PI | 1458 | MESK2-RI | 1..606 | 255..860 | 2930 | 99.3 | Plus |
| CG15669-PK | 1230 | MESK2-RK | 209..768 | 301..860 | 2700 | 99.2 | Plus |
| CG15669-PJ | 1407 | MESK2-RJ | 1..555 | 306..860 | 2675 | 99.2 | Plus |
| CG15669-PK | 1230 | MESK2-RK | 1..209 | 9..217 | 1045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RC | 2193 | CG15669-RC | 602..1454 | 8..860 | 4205 | 99.5 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 575..1427 | 8..860 | 4205 | 99.5 | Plus |
| MESK2-RF | 2425 | CG15669-RF | 381..1233 | 8..860 | 4205 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511647 | 617..860 | 1160 | 98.4 | Plus |
| 2R | 25286936 | 2R | 21507513..21507722 | 8..217 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 21510866..21511060 | 301..495 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 496..616 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 21510115..21510201 | 215..301 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:53 has no hits.
MXO03617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:12 Download gff for
MXO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15669-PE | 1..852 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:33 Download gff for
MXO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1233 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:21 Download gff for
MXO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1233 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:21 Download gff for
MXO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21507513..21507722 | 8..217 | 100 | -> | Plus |
| 2R | 21510118..21510201 | 218..301 | 100 | -> | Plus |
| 2R | 21510867..21511060 | 302..495 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 496..616 | 100 | -> | Plus |
| 2R | 21511404..21511647 | 617..860 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:33 Download gff for
MXO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17398628..17398748 | 496..616 | 100 | -> | Plus |
| arm_2R | 17395018..17395227 | 8..217 | 100 | -> | Plus |
| arm_2R | 17397623..17397706 | 218..301 | 100 | -> | Plus |
| arm_2R | 17398372..17398565 | 302..495 | 100 | -> | Plus |
| arm_2R | 17398909..17399152 | 617..860 | 98 | | Plus |
