MXO03620.5prime Sequence
825 bp (679 high quality bases) assembled on 2007-06-27
> MXO03620.5prime
CAGTCGACATGACCACATATCAAGTGAACTTCAACCAGGACTTTACTTCC
CTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTAGTCGATTTCTAGCCA
GGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCAAATCCGAA
TCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCACCGCCCAG
AAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAGGACATCTG
TAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAACCGCCAAC
GCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACATCCGCGAC
ATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAGCAGGGTCT
ATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTGCCAAACGA
GCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGGGCATGACC
ATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCGCCCAGCGG
AGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCGGGTCTTTT
GTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCGTCAGCTGT
GTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTCCTCTGCGC
CTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATACGCGGGCAG
TGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCAAGTCCGAA
AATTCTGCCAAGGAAGCAGTGGCAT
MXO03620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8678-PA | 1416 | CG8678-RA | 1..817 | 9..825 | 4010 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg18b-RB | 2435 | CG8678-RB | 276..1092 | 9..825 | 4040 | 99.6 | Plus |
| Atg18b-RA | 2064 | CG8678-RA | 276..1092 | 9..825 | 4040 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21213917..21214647 | 777..47 | 3625 | 99.7 | Minus |
| 2L | 23513712 | 2L | 21213721..21213771 | 825..775 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:09 has no hits.
MXO03620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:34 Download gff for
MXO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8678-PA | 1..817 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:33 Download gff for
MXO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8678-RA | 271..1092 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:19 Download gff for
MXO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18b-RA | 271..1092 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:19 Download gff for
MXO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21213721..21213768 | 778..825 | 100 | <- | Minus |
| 2L | 21213917..21214647 | 47..777 | 99 | <- | Minus |
| 2L | 21220260..21220302 | 1..46 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:33 Download gff for
MXO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21213721..21213768 | 778..825 | 100 | <- | Minus |
| arm_2L | 21213917..21214647 | 47..777 | 99 | <- | Minus |
| arm_2L | 21220260..21220302 | 1..46 | 91 | | Minus |
