MXO03621.5prime Sequence
629 bp (471 high quality bases) assembled on 2007-06-27
> MXO03621.5prime
CAGTCGACATGAAGTCGGTTCAGTGGGTGAAAATATTGCTTTGCCTGATC
CTTGCGTGCGTCAATGTATTCCTCTTCGTGGTGTCTTGGGGAGTGGACTA
TCGCATCTTGGTAGCTAGGGAGCATATACGCTTCCGCCAGGAGATGCCCA
CCATGGACAGTTGGATAAACTCGCCATTCGGGAAGCTGAAAAACTATGTG
TTCAACGTGACCAACGCCGAGGAGTTTCGCAGCGGTCGTGATAGCAGACT
TAAGGTAAAGGAGATCGGCCCCATTGTGTACAGAATCGTGGGGTTCAACG
ACATCTTAGATCGCAACGAGACCAACGTTAGGTATCGCAAGCACAGATAC
CGCGTAGTGGAATTCCTCCCGGAGGAAAGCGTAGCTTTTTACCCCCTCCA
CTGGACCATTACCTCCACAAACAACGTTATCCTGGGCGCAGCGACGAAAG
TCAAGCATACGGCGCCACTTGCACCCTTTCGGTTTTGATGCAGCGCTCAT
GATGGAGGATATATTTGTTACAGACAGCGTATACTACTTCCTGTGGGAGT
TCACCCGTCCCCTGCTGCAAACGCTCTCCAGGATCTCGAACATAAGACCC
AACGTCTCTGTTCTCTACAACGCTCTCAA
MXO03621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-PA | 1524 | CG2736-RA | 1..377 | 9..385 | 1885 | 100 | Plus |
| CG2736-PA | 1524 | CG2736-RA | 469..620 | 478..629 | 735 | 99.3 | Plus |
| CG2736-PA | 1524 | CG2736-RA | 392..465 | 400..473 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1726 | CG2736-RA | 84..703 | 9..629 | 2915 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24974646..24975258 | 622..9 | 2855 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:16 has no hits.
MXO03621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:42 Download gff for
MXO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-PA | 1..618 | 9..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:39 Download gff for
MXO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..701 | 2..627 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:21 Download gff for
MXO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..701 | 2..627 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:21 Download gff for
MXO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24974641..24975266 | 2..627 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:39 Download gff for
MXO03621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20862164..20862789 | 2..627 | 96 | | Minus |
