MXO03623.5prime Sequence
724 bp (659 high quality bases) assembled on 2007-06-27
> MXO03623.5prime
CAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTGCTGCCAGT
GCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCCACGATGAC
GGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATCCGCCTGTA
CCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATGTGATCAAG
ACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAGTGTTTCCT
CTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCCGGACACGC
CCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCACCATTGAC
GCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTGTGGTCGGG
GCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCATATACTTCG
TGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACTACAAATAC
ACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCGATTCCATT
TCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGCCGTAACCT
GTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGCAGCGCATG
ACGCACGCCGAGATTGTTTGGCACCATTCGCCCAGTGGTGCAGTCGCAGG
GCGTGCTGGGCTTGTGGCGCGGTC
MXO03623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14209-PB | 1164 | Shawn-RB | 1..656 | 9..664 | 3280 | 100 | Plus |
| CG14209-PC | 1164 | Shawn-RC | 1..656 | 9..664 | 3280 | 100 | Plus |
| CG14209-PD | 1164 | Shawn-RD | 1..656 | 9..664 | 3280 | 100 | Plus |
| CG14209-PB | 1164 | Shawn-RB | 656..715 | 665..724 | 275 | 98.3 | Plus |
| CG14209-PC | 1164 | Shawn-RC | 656..715 | 665..724 | 275 | 98.3 | Plus |
| CG14209-PD | 1164 | Shawn-RD | 656..715 | 665..724 | 275 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shawn-RE | 3255 | CG14209-RE | 1890..2605 | 8..724 | 3545 | 99.7 | Plus |
| Shawn-RD | 1618 | CG14209-RD | 253..968 | 8..724 | 3545 | 99.7 | Plus |
| Shawn-RC | 3032 | CG14209-RC | 1688..2403 | 8..724 | 3545 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19614442..19614817 | 348..724 | 1820 | 99.5 | Plus |
| X | 23542271 | X | 19614213..19614383 | 178..348 | 855 | 100 | Plus |
| X | 23542271 | X | 19613974..19614143 | 8..177 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 7722807..7722912 | 116..221 | 215 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:32 has no hits.
MXO03623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:41:56 Download gff for
MXO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14209-PD | 1..715 | 9..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:16 Download gff for
MXO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shawn-RB | 1592..2314 | 1..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:08 Download gff for
MXO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shawn-RC | 1681..2403 | 1..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:08 Download gff for
MXO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19613967..19614143 | 1..177 | 98 | -> | Plus |
| X | 19614213..19614382 | 178..347 | 100 | -> | Plus |
| X | 19614442..19614817 | 348..724 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:16 Download gff for
MXO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19508000..19508176 | 1..177 | 98 | -> | Plus |
| arm_X | 19508246..19508415 | 178..347 | 100 | -> | Plus |
| arm_X | 19508475..19508850 | 348..724 | 99 | | Plus |
