MXO03627.5prime Sequence
807 bp (727 high quality bases) assembled on 2007-06-27
> MXO03627.5prime
CAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCACGGAGAAG
GATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTACTTTGTGAC
CTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCGCACCAACA
TGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCAAGTCTGGA
GAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATTCCTATTGA
TGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCAGGGCTACA
TCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTCCCTTTGGC
ATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTACGGCATGTT
GATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCGCGGTGGAG
GTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAGGTGAGGGT
CCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATTCCGCCCAA
CGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACAGTTTGGAA
CCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACGGATTCGAT
GGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGTACCGTCTG
GTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTCGCATCCCA
CTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCTGGGGAACT
GATGTTG
MXO03627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8098-PA | 1551 | Picot-RA | 1..799 | 9..807 | 3995 | 100 | Plus |
| CG8098-PB | 1590 | Picot-RB | 104..838 | 73..807 | 3675 | 100 | Plus |
| CG6978-PA | 1440 | CG6978-RA | 154..221 | 120..187 | 190 | 91.1 | Plus |
| CG4330-PA | 1680 | CG4330-RA | 266..302 | 151..187 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 886..1684 | 9..807 | 3995 | 100 | Plus |
| Picot-RC | 2367 | CG8098-RC | 383..1181 | 9..807 | 3995 | 100 | Plus |
| Picot-RA | 2735 | CG8098-RA | 751..1549 | 9..807 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656636..16657194 | 807..249 | 2795 | 100 | Minus |
| 2R | 25286936 | 2R | 16657263..16657440 | 249..72 | 890 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 288..674 | 465 | 74.7 | Plus |
| 2R | 25286936 | 2R | 16663514..16663578 | 73..9 | 325 | 100 | Minus |
| X | 23542271 | X | 4784336..4784422 | 105..191 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:38 has no hits.
MXO03627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:04 Download gff for
MXO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8098-PA | 1..799 | 9..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:22 Download gff for
MXO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 745..1549 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:12 Download gff for
MXO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 745..1549 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:12 Download gff for
MXO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16656636..16657194 | 249..807 | 100 | <- | Minus |
| 2R | 16657264..16657439 | 73..248 | 100 | <- | Minus |
| 2R | 16663515..16663584 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:22 Download gff for
MXO03627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12544141..12544699 | 249..807 | 100 | <- | Minus |
| arm_2R | 12544769..12544944 | 73..248 | 100 | <- | Minus |
| arm_2R | 12551020..12551089 | 1..72 | 94 | | Minus |
