MXO03630.5prime Sequence
874 bp (771 high quality bases) assembled on 2007-06-27
> MXO03630.5prime
CAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCAGCAACAAG
AACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCACGCGGACAT
CATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAACGAGTCGA
CGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACGTCAGCGGT
GAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACCTACATCGC
CGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGACCTGCATAA
TCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCAGCAAAAAA
CTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCCGGCCAACT
GGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGTGCTGCTGA
AGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCTTCCCCGAC
CATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAGCTGGCCTA
CTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAAGACCAAGG
AGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCACCCTGATC
GTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTGCTGCTCAC
GCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCTGATCGGCG
TGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGAACAATGCC
GTCTTTTTTCTGATCCGCTTCGCTACGTCCGTGATCGGTGTGCTCACGCT
GTACTACGGCATCGGGGGTGTGCG
MXO03630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11642-PB | 1107 | CG11642-RB | 1..866 | 9..874 | 4305 | 99.8 | Plus |
| CG11642-PA | 1107 | CG11642-RA | 1..866 | 9..874 | 4305 | 99.8 | Plus |
| CG11642-PC | 1107 | CG11642-RC | 1..866 | 9..874 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TRAM-RE | 1656 | CG11642-RE | 183..1048 | 9..874 | 4315 | 99.9 | Plus |
| TRAM-RD | 1623 | CG11642-RD | 150..1015 | 9..874 | 4315 | 99.9 | Plus |
| TRAM-RC | 1896 | CG11642-RC | 423..1288 | 9..874 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 936349..937214 | 9..874 | 4315 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:13 has no hits.
MXO03630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:11 Download gff for
MXO03630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11642-PC | 1..866 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:55 Download gff for
MXO03630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1288 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:56 Download gff for
MXO03630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1288 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:56 Download gff for
MXO03630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 936342..937214 | 1..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:55 Download gff for
MXO03630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 830375..831247 | 1..874 | 99 | | Plus |
