MXO03632.5prime Sequence
874 bp (742 high quality bases) assembled on 2007-06-27
> MXO03632.5prime
CAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCAAGGAGTCA
GCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGCATGCAGGG
GTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTCGCTGCCGG
ACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACGGAGGCGCC
ACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTTCTCAAGCG
GCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGGCTTTCTGG
ACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACCAGATGGCC
GGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTTTATTGCCC
CAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACAACTGGAGG
TCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCAAGCGGATC
ATCCAAGGCGGCGGCTGGGTTGAGTTCAATCACGTCAACGGCAATCTTGC
GCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAACAAAAAAC
CGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGCGGAAAATC
ATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATTTGGGATGT
AATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCATCGGCATGG
GCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACTGCCTATCA
CCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACCGTGGTGCT
GGTGTGCCTGCTGCACGGGCGTCC
MXO03632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17746-PA | 1116 | CG17746-RA | 1..866 | 9..874 | 4230 | 99.5 | Plus |
| CG17746-PB | 1116 | CG17746-RB | 1..866 | 9..874 | 4230 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17746-RB | 1694 | CG17746-RB | 222..1087 | 9..874 | 4270 | 99.5 | Plus |
| CG17746-RA | 1577 | CG17746-RA | 247..1112 | 9..874 | 4270 | 99.5 | Plus |
| Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 9..866 | 535 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3237742..3238076 | 621..287 | 1645 | 99.4 | Minus |
| 3L | 28110227 | 3L | 3238611..3238893 | 291..9 | 1415 | 100 | Minus |
| 3L | 28110227 | 3L | 3237412..3237666 | 874..620 | 1245 | 99.2 | Minus |
| 3L | 28110227 | 3L | 581563..581813 | 9..259 | 400 | 77.3 | Plus |
| 3L | 28110227 | 3L | 582009..582426 | 452..866 | 325 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:28 has no hits.
MXO03632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:18 Download gff for
MXO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-PB | 1..866 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:59 Download gff for
MXO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-RA | 238..1112 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:48 Download gff for
MXO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17746-RA | 238..1112 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:48 Download gff for
MXO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3237412..3237664 | 622..874 | 99 | <- | Minus |
| 3L | 3237742..3238072 | 291..621 | 99 | <- | Minus |
| 3L | 3238612..3238897 | 1..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:59 Download gff for
MXO03632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3237412..3237664 | 622..874 | 99 | <- | Minus |
| arm_3L | 3237742..3238072 | 291..621 | 99 | <- | Minus |
| arm_3L | 3238612..3238897 | 1..290 | 98 | | Minus |
