MXO03633.5prime Sequence
765 bp (744 high quality bases) assembled on 2007-06-27
> MXO03633.5prime
CAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAAAATTCGAA
TCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTACCGGCTACT
ACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGAAATCGTGC
GCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGGGCTGCAAG
CGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCACAAGTGCCA
TGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGATCGCGGAAA
TCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGAGCTGGAAC
TCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTGCTGCTCGA
GCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAAGCGGGTCC
AGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTTTCACGTTC
ACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTATCGGCGAGA
ATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGAATACTTCG
AGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTGACAATATG
CCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAACACAATTC
ATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTACTTAAGGT
CCCAAAAAGTACACC
MXO03633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17153-PA | 1107 | CG17153-RA | 1..757 | 9..765 | 3785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp-RA | 1412 | CG17153-RA | 55..815 | 5..765 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12118311..12118627 | 5..321 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 12118688..12118912 | 321..545 | 1125 | 100 | Plus |
| 3L | 28110227 | 3L | 12118971..12119192 | 544..765 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:00 has no hits.
MXO03633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:25 Download gff for
MXO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17153-PA | 1..757 | 9..765 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:32 Download gff for
MXO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 50..815 | 1..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:21 Download gff for
MXO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 50..815 | 1..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:21 Download gff for
MXO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12118972..12119192 | 545..765 | 100 | | Plus |
| 3L | 12118306..12118626 | 1..320 | 99 | -> | Plus |
| 3L | 12118688..12118911 | 321..544 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:32 Download gff for
MXO03633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12111406..12111726 | 1..320 | 99 | -> | Plus |
| arm_3L | 12111788..12112011 | 321..544 | 100 | -> | Plus |
| arm_3L | 12112072..12112292 | 545..765 | 100 | | Plus |
