MXO03634.5prime Sequence
776 bp (775 high quality bases) assembled on 2007-06-27
> MXO03634.5prime
CAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTCGGACACCT
TCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTATATC
CACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGTTTG
AACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCCAGA
AGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAAAAC
AGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAAGAG
AGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTTGAT
ATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTCCGA
AGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACATTTC
ATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTCGGA
CTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCAAAG
AGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTACATT
CAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGCTGG
GACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGGAGT
GACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAGATA
AGTTCTTAGTAGCGTTAGATATGGAC
MXO03634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2944-PA | 1050 | gus-RA | 1..768 | 9..776 | 3840 | 100 | Plus |
| CG2944-PC | 1032 | gus-RC | 3..750 | 29..776 | 3740 | 100 | Plus |
| CG2944-PD | 1092 | gus-RD | 63..810 | 29..776 | 3740 | 100 | Plus |
| CG2944-PB | 1032 | gus-RB | 3..750 | 29..776 | 3740 | 100 | Plus |
| CG2944-PE | 1056 | gus-RE | 27..774 | 29..776 | 3740 | 100 | Plus |
| CG2944-PF | 846 | gus-RF | 1..564 | 213..776 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RG | 1745 | CG2944-RG | 246..1013 | 9..776 | 3840 | 100 | Plus |
| gus-RL | 1933 | CG2944-RL | 451..1201 | 26..776 | 3755 | 100 | Plus |
| gus-RM | 1525 | CG2944-RM | 165..912 | 29..776 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120905..5121655 | 776..26 | 3755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:17 has no hits.
MXO03634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:33 Download gff for
MXO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2944-PA | 1..768 | 9..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:18 Download gff for
MXO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1013 | 9..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:10 Download gff for
MXO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1013 | 9..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:10 Download gff for
MXO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5120905..5121652 | 29..776 | 100 | <- | Minus |
| 2R | 5121983..5122002 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:18 Download gff for
MXO03634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1008410..1009157 | 29..776 | 100 | <- | Minus |
| arm_2R | 1009488..1009507 | 9..28 | 100 | | Minus |
