MXO03636.5prime Sequence
820 bp (726 high quality bases) assembled on 2007-06-27
> MXO03636.5prime
CAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGCCCTATGAG
GGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAGGTTTTCAC
CCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGAGGCAAATG
GAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATGGACGTTTC
TACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCTGCCAATGG
CGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCACCCCTGCCG
TATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTGTTTTGACT
GCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATCAAGTTCAA
CTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCACATCTACA
AGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACCTGCAGATC
GACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGAAAGCCCTT
TACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCACATGGAGG
ATATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCAAAGCCACT
GGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTAACTGGCTC
ATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGAATCATCGG
TGGTCCCCACCACTCCACTGCCCGACTTTGGTGGTCTGCATCCTGACCCA
AATCTCACATACGCCAAGGA
MXO03636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5165-PA | 1683 | Pgm-RA | 1..812 | 9..820 | 4010 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..853 | 6..820 | 4045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16127074..16127561 | 820..333 | 2410 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 334..85 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 88..6 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:08 has no hits.
MXO03636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:47 Download gff for
MXO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5165-PA | 1..811 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:41 Download gff for
MXO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..852 | 1..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:27 Download gff for
MXO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..852 | 1..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:27 Download gff for
MXO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16127075..16127560 | 334..819 | 99 | <- | Minus |
| 3L | 16128095..16128341 | 87..333 | 100 | <- | Minus |
| 3L | 16128413..16128497 | 1..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:41 Download gff for
MXO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16120175..16120660 | 334..819 | 99 | <- | Minus |
| arm_3L | 16121195..16121441 | 87..333 | 100 | <- | Minus |
| arm_3L | 16121513..16121597 | 1..86 | 98 | | Minus |
