MXO03637.5prime Sequence
794 bp (716 high quality bases) assembled on 2007-06-27
> MXO03637.5prime
CAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGAAGGCGGAG
GCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACTGGCCACAA
GCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCGCCAAAAGT
ATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACGAGGCCAGG
GCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACATCCAGGGA
ATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAGAGAGCTGG
AGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCATCAACGACC
AGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTGGCCTGCGA
AGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCTACCCAAGA
GCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGCTGGAGGCA
GATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAATGTTAAGGA
GAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGAGAATCTTA
TCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGTCCAACAAA
ATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGATGTTCTGCA
AGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTTCCTTTTGT
GGACAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACACTAG
MXO03637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5469-PD | 1326 | Gint3-RD | 1..746 | 9..754 | 3730 | 100 | Plus |
| CG5469-PB | 1326 | Gint3-RB | 1..746 | 9..754 | 3730 | 100 | Plus |
| CG5469-PC | 1326 | Gint3-RC | 1..746 | 9..754 | 3730 | 100 | Plus |
| CG5469-PD | 1326 | Gint3-RD | 747..787 | 754..794 | 205 | 100 | Plus |
| CG5469-PB | 1326 | Gint3-RB | 747..787 | 754..794 | 205 | 100 | Plus |
| CG5469-PC | 1326 | Gint3-RC | 747..787 | 754..794 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42306-RB | 2048 | CG42306-RB | 603..1390 | 8..794 | 3915 | 99.9 | Plus |
| CG42306-RA | 2399 | CG42306-RA | 954..1741 | 8..794 | 3915 | 99.9 | Plus |
| CG42306-RC | 1950 | CG42306-RC | 505..1292 | 8..794 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18659198..18659932 | 794..61 | 3625 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18659986..18660040 | 62..8 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:23 has no hits.
MXO03637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:42:55 Download gff for
MXO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5469-PC | 1..787 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:04 Download gff for
MXO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gint3-RB | 603..1390 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:01 Download gff for
MXO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42306-RC | 505..1292 | 8..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:01 Download gff for
MXO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18659198..18659930 | 63..794 | 99 | <- | Minus |
| 2R | 18659986..18660040 | 8..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:04 Download gff for
MXO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14546703..14547435 | 63..794 | 99 | <- | Minus |
| arm_2R | 14547491..14547545 | 8..62 | 100 | | Minus |
