MXO03638.5prime Sequence
801 bp (744 high quality bases) assembled on 2007-06-27
> MXO03638.5prime
CAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAAGTTCATCA
ATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATTGCGAATCA
CACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGCGAGTGTCC
AACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCTTGTCCAAC
AGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATCCACGACTA
CAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTTCCTTTTTC
GGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAATCACCGCC
AGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAGGAACTGAA
AAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGAAAAGCAGA
CTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGAACCTTATA
GTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTATGGGGTCA
GATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTTAGTGTACA
TGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCACCGAAATG
ACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTGGATAACTC
TTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCATCATTGAAG
TGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAAAACATCGCC
A
MXO03638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-PA | 1056 | CG4942-RA | 1..793 | 9..801 | 3940 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1306 | CG4942-RA | 103..895 | 9..801 | 3950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9073207..9073671 | 9..473 | 2325 | 100 | Plus |
| 3L | 28110227 | 3L | 9073728..9074056 | 473..801 | 1630 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:41 has no hits.
MXO03638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:02 Download gff for
MXO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-PA | 1..792 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:08 Download gff for
MXO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..894 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:01 Download gff for
MXO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..894 | 9..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:01 Download gff for
MXO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9073207..9073671 | 9..473 | 100 | -> | Plus |
| 3L | 9073729..9074055 | 474..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:08 Download gff for
MXO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9066829..9067155 | 474..800 | 99 | | Plus |
| arm_3L | 9066307..9066771 | 9..473 | 100 | -> | Plus |
