MXO03639.5prime Sequence
874 bp (756 high quality bases) assembled on 2007-06-27
> MXO03639.5prime
CAGTCGACATGTCAGCGCCACAGCAACAACAACAGTCGCAGCAGAAGCAA
CAACAACATGTGCGCGTGGTCGAGCAACAACAGGTGGAACCAGCTGAGGC
GGTGACCTCCAGCATGGAATCGGAATCCATCTCGGCCAGCAAGGAGCTAA
CCGGTTTGACGCACGAGTGCGGCGTTTTCGGGGCAATCGCTTGCGGAGAT
TGGCCCACCCAAATGGACATTGCACACGTGATCTGTTTGGGGCTGGTGGC
ACTGCAGCATCGTGGGCAGGAGTCTGCGGGCATAGCGACCAGCGAGGGAA
AGTGCTCCAAGAACTTCAACGTGCACAAGGGCATGGGTATGATCAGCACC
CTGTTCAACGACGACTCCATGAAGAAGCTTCGTGGCAACCTGGGCATCGG
TCATACACGCTACTCGACCGCTGGCGGATCCGGAGTGGTTAACTGTCAGC
CCTTTGAGGTACATACGACACATGGAGCATTGGCCCTGGCCCACAATGGT
GAGCTTGTTAACAACGAATCTCTAAGAAGGGAGGTTTTGGCCAGAGGCGT
GGGCTTATCCACGCACAGCGACAGTGAGTTGATCGCCCAGTCGTTGTGCT
GCGCCCCGGAGGATGTTTCCGAACTGGATGGACCCAACTGGCCAGCTAGG
ATCAGGCATTTCATGATGCTGGCGCCACTCTCCTACTCGCTGGTCATCAT
GCTAAAGGACAAAATCTACGCCGTGAGGGACACCTATGGAAATAGGCCGC
TATGCATTGGCAAGATAGTGCCCATCAATGCTGGGCACGGAAATAACTTA
AACACACCTGCCGATGGTTGGGTGGTGTCCAGTGAGAGCTGTGGCTTCCT
GTCGATCGGTGCCAGATACGTCCG
MXO03639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2867-PA | 1641 | Prat-RA | 1..866 | 9..874 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..959 | 7..874 | 4325 | 99.9 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..956 | 7..874 | 4325 | 99.9 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1059 | 164..868 | 990 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7910744..7911611 | 874..7 | 4325 | 99.9 | Minus |
| 3L | 28110227 | 3L | 6912872..6913526 | 868..214 | 920 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:27 has no hits.
MXO03639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:09 Download gff for
MXO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2867-PA | 1..866 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:23 Download gff for
MXO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 84..956 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:18 Download gff for
MXO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 84..956 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:18 Download gff for
MXO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7910744..7911616 | 1..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:23 Download gff for
MXO03639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3736466..3737338 | 1..874 | 99 | | Minus |
