MXO03642.5prime Sequence
845 bp (549 high quality bases) assembled on 2007-06-27
> MXO03642.5prime
CAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCAACAAGGAG
CTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCCGTGACGGA
CAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAATCACCGGGG
TTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTCCGAGGCGT
GAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAGCCAGTGCG
TCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAACAACAAGA
TCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTATACAACACCTCG
ATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCTGATATGAGCTC
CCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGTGCCTAATT
ACTCCAAGGACCAGCAACCTAGACGTTATGTTTCTCTAGCCAAATCCGGA
GTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTGTACGAACA
GGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGTGCCAGCCG
CCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAACCTTCGACA
TACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACTCAAACCAA
CTTAAACTCAACCAGCTACGATGAGTCATCTACGTACAATCCAGAACTTT
CACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGCCTTTTGGT
GGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGTGTT
MXO03642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9424-PA | 1056 | bocksbeutel-RA | 1..837 | 9..845 | 4060 | 99.4 | Plus |
| CG9424-PB | 1200 | bocksbeutel-RB | 1..837 | 9..845 | 4060 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RB | 1535 | CG9424-RB | 74..910 | 9..845 | 4110 | 99.4 | Plus |
| bocksbeutel-RA | 1435 | CG9424-RA | 74..910 | 9..845 | 4110 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9590093..9590929 | 845..9 | 4110 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 270..308 | 111 | 79.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3184..3368 | 154..347 | 109 | 58.1 | Plus |
MXO03642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:32 Download gff for
MXO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9424-PB | 1..837 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:42 Download gff for
MXO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..910 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:26 Download gff for
MXO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..910 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:26 Download gff for
MXO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9590093..9590929 | 9..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:42 Download gff for
MXO03642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5415815..5416651 | 9..845 | 99 | | Minus |
