MXO03643.5prime Sequence
798 bp (792 high quality bases) assembled on 2007-06-27
> MXO03643.5prime
CAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGTTGACTCTA
CGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCACCGACTCA
ACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTTCGGGGAGG
TACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGGTACCTGCT
GATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCCAACATTCA
GGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAGCTTTACGC
GATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAGCGCTGCGT
TGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATATCACATTGG
TGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAATCGTAACA
ATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAATTCAGCGC
ATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAGGCGGCCAA
TGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGGTGAACAAG
ATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAGCATCCGCT
GCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAACCACCAAA
TGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCATCACGTTCT
TCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTCTAGACC
MXO03643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 622..1395 | 9..782 | 3870 | 100 | Plus |
CG14536-PB | 777 | CG14536-RB | 1..774 | 9..782 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1941 | 9..782 | 3870 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 957..1730 | 9..782 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796933..7797326 | 782..389 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 388..52 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798206 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 519..660 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 653..581 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 653..551 | 112 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6879 | 653..557 | 107 | 56.7 | Minus |
MXO03643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:39 Download gff for
MXO03643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 9..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:00 Download gff for
MXO03643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 9..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:33 Download gff for
MXO03643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 9..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:33 Download gff for
MXO03643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7797397..7797732 | 53..388 | 100 | <- | Minus |
2L | 7798163..7798206 | 9..52 | 100 | | Minus |
2L | 7796933..7797326 | 389..782 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:00 Download gff for
MXO03643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796933..7797326 | 389..782 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 53..388 | 100 | <- | Minus |
arm_2L | 7798163..7798206 | 9..52 | 100 | | Minus |