MXO03645.5prime Sequence
817 bp (790 high quality bases) assembled on 2007-06-27
> MXO03645.5prime
CAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCC
AGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAA
AAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGC
TGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAG
GACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTT
CCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATC
TCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGAT
CGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGC
CTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGG
GCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAG
GTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCT
GCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGC
ACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAAC
TACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAA
CAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACC
GAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAA
TACATTACGTCGGTGCA
MXO03645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PA | 1563 | CG6145-RA | 301..1109 | 9..817 | 4045 | 100 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 385..1193 | 9..817 | 4045 | 100 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..809 | 9..817 | 4045 | 100 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 237..329 | 8..100 | 265 | 91.3 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 345..437 | 8..100 | 265 | 91.3 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 234..326 | 8..100 | 265 | 91.3 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..92 | 9..100 | 260 | 91.3 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 478..566 | 309..397 | 195 | 88.7 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 586..674 | 309..397 | 195 | 88.7 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 475..563 | 309..397 | 195 | 88.7 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 241..329 | 309..397 | 195 | 88.7 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 370..425 | 138..193 | 155 | 91 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 478..533 | 138..193 | 155 | 91 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 367..422 | 138..193 | 155 | 91 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 133..188 | 138..193 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 336..1144 | 9..817 | 4045 | 100 | Plus |
| CG6145-RE | 1843 | CG6145-RE | 190..998 | 9..817 | 4045 | 100 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 173..981 | 9..817 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538364..13538855 | 817..326 | 2460 | 100 | Minus |
| 2R | 25286936 | 2R | 13538972..13539288 | 325..9 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 556..326 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13549668..13549856 | 193..8 | 445 | 83.6 | Minus |
| 2R | 25286936 | 2R | 13549120..13549224 | 817..713 | 210 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:34 has no hits.
MXO03645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:53 Download gff for
MXO03645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PB | 1..808 | 9..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:09 Download gff for
MXO03645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..980 | 3..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:06 Download gff for
MXO03645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..980 | 3..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:06 Download gff for
MXO03645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538365..13538855 | 326..816 | 100 | <- | Minus |
| 2R | 13538972..13539296 | 3..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:09 Download gff for
MXO03645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425870..9426360 | 326..816 | 100 | <- | Minus |
| arm_2R | 9426477..9426801 | 3..325 | 99 | | Minus |
