MXO03646.5prime Sequence
864 bp (796 high quality bases) assembled on 2007-06-27
> MXO03646.5prime
CAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGCAGGTGGGT
CAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCGACAAAAGC
GCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCCACCGAAGA
ACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCATCAATCGA
CCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAGCTTTGCGA
CGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGCCGTGCTGT
ACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGGAGATTAGC
ACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGACCGGAGGG
CTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGTGTGCGGCA
TCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCATGTGCGAT
CTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAATCGACGCTT
TGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGCTATGATTG
GATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGGTGGGCTCC
CAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCCACAGGCAC
GGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAAGTTCCCGC
AACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCACGTTCGAG
ACCTCAACGTTCCACCAGGGCGGGCAGAATGAGGTGATGTTCACGTCCCG
TGAAATCATCGAGG
MXO03646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5844-PA | 1137 | CG5844-RA | 1..811 | 9..819 | 4055 | 100 | Plus |
| CG5844-PA | 1137 | CG5844-RA | 816..856 | 824..864 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5844-RA | 1355 | CG5844-RA | 84..940 | 8..864 | 4240 | 99.8 | Plus |
| CG5611-RC | 1375 | CG5611-RC | 470..548 | 478..556 | 200 | 83.5 | Plus |
| CG5611-RA | 1096 | CG5611-RA | 470..548 | 478..556 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12434415..12435169 | 110..864 | 3730 | 99.6 | Plus |
| 3R | 32079331 | 3R | 12434242..12434345 | 8..111 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 27635513..27635591 | 556..478 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:18 has no hits.
MXO03646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:43:59 Download gff for
MXO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-PA | 1..856 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:31 Download gff for
MXO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-RA | 75..936 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:36 Download gff for
MXO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5844-RA | 79..940 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:36 Download gff for
MXO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12434235..12434345 | 1..111 | 96 | -> | Plus |
| 3R | 12434417..12435169 | 112..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:31 Download gff for
MXO03646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8259957..8260067 | 1..111 | 96 | -> | Plus |
| arm_3R | 8260139..8260891 | 112..864 | 99 | | Plus |
