MXO03648.5prime Sequence
633 bp (633 high quality bases) assembled on 2007-06-27
> MXO03648.5prime
CAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCTCCGGTTGG
CCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGCAATAACAA
CGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCGCACCATCA
ACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGCCGCTCTTT
GAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGCGAGGAATT
CGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCTGGTCCACG
AGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCACGTTCTTC
AAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTCGAGGGCCT
CAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGTAAAGCAGG
AGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGAACTTTGAG
CCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCCAAGGAGCA
CAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGACGGGAACG
CCAGTTACGATGTACCCGCAAGCTTTCTAGACC
MXO03648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3689-PB | 612 | CG3689-RB | 1..609 | 9..617 | 3045 | 100 | Plus |
| CG3689-PC | 714 | CG3689-RC | 1..577 | 9..585 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3689-RB | 2225 | CG3689-RB | 239..847 | 9..617 | 3045 | 100 | Plus |
| CG3689-RC | 1177 | CG3689-RC | 239..815 | 9..585 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9411479..9411743 | 155..419 | 1325 | 100 | Plus |
| 3L | 28110227 | 3L | 9411815..9411982 | 418..585 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9411276..9411421 | 9..154 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:27 has no hits.
MXO03648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:12 Download gff for
MXO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-PB | 1..612 | 9..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:45 Download gff for
MXO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-RB | 239..852 | 9..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:26 Download gff for
MXO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-RB | 239..852 | 9..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:26 Download gff for
MXO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9411276..9411421 | 9..154 | 100 | -> | Plus |
| 3L | 9411479..9411743 | 155..419 | 100 | -> | Plus |
| 3L | 9411817..9411982 | 420..585 | 100 | -> | Plus |
| 3L | 9412155..9412191 | 586..623 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:45 Download gff for
MXO03648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9404376..9404521 | 9..154 | 100 | -> | Plus |
| arm_3L | 9404579..9404843 | 155..419 | 100 | -> | Plus |
| arm_3L | 9404917..9405082 | 420..585 | 100 | -> | Plus |
| arm_3L | 9405255..9405291 | 586..623 | 92 | | Plus |
