MXO03650.5prime Sequence
624 bp (624 high quality bases) assembled on 2007-06-27
> MXO03650.5prime
CAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCATTTATCGGG
CTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCAGAAGGGCG
AATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGACCGCGACA
TAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGGAGAAGATG
TGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGCCCGACCCA
GCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCCCGGCCAGC
CCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACAAGCAACGC
CGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATCTTTCCCAA
TGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGATGGTCGGG
TCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGAGGGCAAGT
GGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGTGCTTACCG
CAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGGTTCGCATC
GGGGACCTGCAAGCTTTCTAGACC
MXO03650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14642-PA | 603 | CG14642-RA | 1..600 | 9..608 | 3000 | 100 | Plus |
| CG14642-PB | 1179 | CG14642-RB | 1..458 | 9..466 | 2290 | 100 | Plus |
| CG14642-PB | 1179 | CG14642-RB | 474..617 | 465..608 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14642-RA | 1344 | CG14642-RA | 23..622 | 9..608 | 3000 | 100 | Plus |
| CG14642-RC | 1305 | CG14642-RC | 23..639 | 9..608 | 2820 | 97.2 | Plus |
| CG14642-RB | 1270 | CG14642-RB | 23..639 | 9..608 | 2820 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4242338..4242695 | 366..9 | 1790 | 100 | Minus |
| 3R | 32079331 | 3R | 4241977..4242088 | 576..465 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 4242174..4242277 | 466..363 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:09 has no hits.
MXO03650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:19 Download gff for
MXO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-PA | 1..603 | 9..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:55 Download gff for
MXO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-RA | 23..628 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:03 Download gff for
MXO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14642-RA | 23..628 | 9..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:03 Download gff for
MXO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4241978..4242087 | 466..575 | 100 | <- | Minus |
| 3R | 4242175..4242273 | 367..465 | 100 | <- | Minus |
| 3R | 4242338..4242695 | 9..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:55 Download gff for
MXO03650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 67700..67809 | 466..575 | 100 | <- | Minus |
| arm_3R | 67897..67995 | 367..465 | 100 | <- | Minus |
| arm_3R | 68060..68417 | 9..366 | 100 | | Minus |
