MXO03652.5prime Sequence
808 bp (807 high quality bases) assembled on 2007-06-27
> MXO03652.5prime
CAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGGTGCTGAAG
GGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCGCCGGGCGA
GAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAGCAGCCTGG
TGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCTCCGTGAAG
CTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACGATGACCAA
GAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCTCTTCGGGC
TGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACTACCTGCTC
ACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCACCTGCTCAG
TCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGTGCCCTTCC
ACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACATCGTTAAC
TACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCCTCGGCGAT
CGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAATCTGTTCG
GTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGAACAACTTC
GTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGACATCTTCTG
GGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTTCGAGGCGC
CCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCCTGAACGCC
TCGAACTT
MXO03652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11840-PA | 1170 | Spp-RA | 1..800 | 9..808 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1736 | CG11840-RA | 111..911 | 8..808 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 543677..544268 | 808..217 | 2945 | 99.8 | Minus |
| 2L | 23513712 | 2L | 544333..544543 | 218..8 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:16 has no hits.
MXO03652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:26 Download gff for
MXO03652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11840-PA | 1..800 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:49 Download gff for
MXO03652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..911 | 1..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:32 Download gff for
MXO03652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..911 | 1..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:32 Download gff for
MXO03652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 543677..544266 | 219..808 | 99 | <- | Minus |
| 2L | 544333..544546 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:49 Download gff for
MXO03652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 544333..544546 | 1..218 | 98 | | Minus |
| arm_2L | 543677..544266 | 219..808 | 99 | <- | Minus |
