MXO03654.5prime Sequence
798 bp (766 high quality bases) assembled on 2007-06-27
> MXO03654.5prime
CAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAACGGCGGCC
AGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCAGAGTTTCG
GAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGACAAATTCG
CATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGTTTCTCATA
CTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAACAACGACGA
TAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACGGGTCATTG
TGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAACGATGAAA
CCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACTCCAGTGAAGAC
AAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGTCTCGGCCA
TTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGCGGCTACTG
AAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGATGGCACCTC
TGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCATTTTTATAT
CCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGCTGGCCGTC
AACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGCAAGACTCT
GGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCTGATAATCA
CCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATCGCGGAT
MXO03654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5884-PA | 1056 | par-6-RA | 1..790 | 9..798 | 3925 | 99.8 | Plus |
| CG5884-PB | 1056 | par-6-RB | 1..790 | 9..798 | 3925 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-6-RB | 2564 | CG5884-RB | 300..1089 | 9..798 | 3935 | 99.9 | Plus |
| par-6-RA | 3032 | CG5884-RA | 300..1089 | 9..798 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17704667..17705153 | 312..798 | 2420 | 99.8 | Plus |
| X | 23542271 | X | 17704370..17704604 | 82..316 | 1160 | 99.6 | Plus |
| X | 23542271 | X | 17703651..17703725 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:31 has no hits.
MXO03654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:33 Download gff for
MXO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5884-PB | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:54 Download gff for
MXO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1089 | 2..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:36 Download gff for
MXO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1089 | 2..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:36 Download gff for
MXO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17703646..17703725 | 2..83 | 95 | -> | Plus |
| X | 17704372..17704600 | 84..312 | 100 | -> | Plus |
| X | 17704668..17705153 | 313..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:54 Download gff for
MXO03654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17597679..17597758 | 2..83 | 95 | -> | Plus |
| arm_X | 17598405..17598633 | 84..312 | 100 | -> | Plus |
| arm_X | 17598701..17599186 | 313..798 | 99 | | Plus |
