MXO03655.5prime Sequence
773 bp (545 high quality bases) assembled on 2007-06-27
> MXO03655.5prime
CAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGCCCGTCCAG
CAAACCACATACATCACCACTGGACCCCAGCAGACCACGTATATCACCAA
TGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCACGGTGATCA
TCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAACGCAATCT
GGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGACATGGCCCA
AGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCTGGAGTTCC
AGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGTCCGCCATT
ACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGTGGTGTGAT
GAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGAGTACGAGT
CGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGTTAATCACT
GTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACCAACAGAGG
AACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGTGGCCATTC
AAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGACATGACCATCAAT
CGAGTACACGGAATTTTTGAAATCGTTTTTACGGCCATTGCGCTGGGAAG
TGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCAGAACCAGG
AGCAGAAAGCACGTGCCAGTGTG
MXO03655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17930-PA | 1509 | CG17930-RA | 1..765 | 9..773 | 3750 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17930-RA | 1653 | CG17930-RA | 95..859 | 9..773 | 3780 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16328439..16328828 | 384..773 | 1905 | 99.2 | Plus |
| 3R | 32079331 | 3R | 16327943..16328144 | 9..210 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 16328202..16328378 | 208..384 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:54 has no hits.
MXO03655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:40 Download gff for
MXO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-PA | 1..765 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:18 Download gff for
MXO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..859 | 2..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:14 Download gff for
MXO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..859 | 2..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:14 Download gff for
MXO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16328205..16328377 | 211..383 | 100 | -> | Plus |
| 3R | 16327935..16328144 | 2..210 | 98 | -> | Plus |
| 3R | 16328439..16328828 | 384..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:18 Download gff for
MXO03655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12153657..12153866 | 2..210 | 98 | -> | Plus |
| arm_3R | 12153927..12154099 | 211..383 | 100 | -> | Plus |
| arm_3R | 12154161..12154550 | 384..773 | 99 | | Plus |
