MXO03656.5prime Sequence
838 bp (836 high quality bases) assembled on 2007-06-27
> MXO03656.5prime
CAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCGAAAAGATT
GGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAACTCCACCGG
CCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAACGGAGGGTG
TTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACCTTAAGCAC
CCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAACAATCTGTA
CATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGATGGATAAGA
AAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGCATCAGATA
TTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCATCGCGATCT
CAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAAGTTGGCTG
ACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGTACACACAC
GAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTGGGCACGAA
ATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCATTTTCTCTG
AAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGATCGATCAA
CTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACAAATTGGCC
TGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAGATGGGAGG
GAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACGAACTCATA
ATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTC
MXO03656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10498-PA | 945 | cdc2c-RA | 1..830 | 9..838 | 4150 | 100 | Plus |
| CG10498-PB | 945 | cdc2c-RB | 1..830 | 9..838 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-RC | 2224 | CG10498-RC | 75..904 | 9..838 | 4150 | 100 | Plus |
| Cdk2-RB | 1215 | CG10498-RB | 75..904 | 9..838 | 4150 | 100 | Plus |
| Cdk2-RA | 1140 | CG10498-RA | 75..904 | 9..838 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20736731..20736929 | 605..803 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 20736090..20736286 | 136..332 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 20736509..20736672 | 442..605 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 20735697..20735824 | 9..136 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 20736339..20736451 | 331..443 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:16 has no hits.
MXO03656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:48 Download gff for
MXO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10498-PB | 1..830 | 9..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:59 Download gff for
MXO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RA | 70..904 | 2..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:06 Download gff for
MXO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk2-RA | 70..904 | 2..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:06 Download gff for
MXO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20736511..20736672 | 444..605 | 100 | -> | Plus |
| 3R | 20736732..20736929 | 606..803 | 100 | -> | Plus |
| 3R | 20736985..20737019 | 804..838 | 100 | | Plus |
| 3R | 20735692..20735824 | 2..136 | 97 | -> | Plus |
| 3R | 20736091..20736286 | 137..332 | 100 | -> | Plus |
| 3R | 20736341..20736451 | 333..443 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:59 Download gff for
MXO03656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16561414..16561546 | 2..136 | 97 | -> | Plus |
| arm_3R | 16561813..16562008 | 137..332 | 100 | -> | Plus |
| arm_3R | 16562063..16562173 | 333..443 | 100 | -> | Plus |
| arm_3R | 16562233..16562394 | 444..605 | 100 | -> | Plus |
| arm_3R | 16562454..16562651 | 606..803 | 100 | -> | Plus |
| arm_3R | 16562707..16562741 | 804..838 | 100 | | Plus |
