MXO03657.5prime Sequence
843 bp (701 high quality bases) assembled on 2007-06-27
> MXO03657.5prime
CAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCAGGAGAAAA
GACAAGGACGAAGATGGTCGTGCAGAGCAGGAGGATTCCGCAGATCAGGT
GGGCGAGCCGCACAGGAAGCTTTTGCGCCTGGGCGACATCCTTGAAACGA
ACGAAGTGCTCCTGAACGAGGCGTATCAGCAACCGGAACTTACCAAGTGG
CTCCAAACAGCCTGGACGGAGGAGAAGAGCCAAGGGACCAAGGAGACGCA
AACCGGTGCTCAGGTCTTCTCGGATCCCTTTCAAATCTGCCTTCTGCCCG
GCATGCTGGAGAAGGGCCAAAGCCAGGCGCTGGTCGCCGAGATCATCCAG
AAGGTGCAGTGGTCGCGCAAACAGATGGATTTGTATGATTTCTACCAGAG
CGCCGACCTCTCCAACATGCCCGCTTGCCGACTGTTGACCAACTTCCTGC
AGGTGCTGCGCAAACAAGTGCGTCCCTGGCTGGAGAAGGTTACCAACCTC
AAGCTGGACTATGTGTCCGCCTCCTGCAGCATGTACACCTGCGGCGACTA
TCTGCTCGTGCACGACGATCTGCTTAAGGACCGACAAGTGGCCTTCATTT
ACTATCTATCGCCTTGGGAAGGAGCGGAGGAATGGACGGATGAGCAGGGC
GGATGCCTAGAGATCTTCGGTAGCGACGATCAGTGCTTTCCACAGTTTCC
AGTGCAGCGAAAGATCGCCCCCAGAGACAACCAGTTTGCCTTCTTCAAGG
TGGGCTCGCGCTCCTTCCACCAAGTAGGCGAGGTTACTACATTCGACTAC
CCGCGTCTTACCCTAAACGGATGGTTCCACGGCGATACCAATG
MXO03657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31120-PA | 1611 | CG31120-RA | 1..835 | 9..843 | 4100 | 99.6 | Plus |
| CG31120-PB | 1611 | CG31120-RB | 1..57 | 9..65 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 101..936 | 8..843 | 4135 | 99.6 | Plus |
| PIG-S-RC | 1764 | CG44255-RC | 101..158 | 8..65 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24916730..24917511 | 843..62 | 3865 | 99.6 | Minus |
| 3R | 32079331 | 3R | 24917709..24917764 | 63..8 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:02 has no hits.
MXO03657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:44:55 Download gff for
MXO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-PA | 1..835 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:24 Download gff for
MXO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..936 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:23 Download gff for
MXO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..936 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:23 Download gff for
MXO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24916730..24917509 | 64..843 | 99 | <- | Minus |
| 3R | 24917709..24917770 | 1..63 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:24 Download gff for
MXO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20742452..20743231 | 64..843 | 99 | <- | Minus |
| arm_3R | 20743431..20743492 | 1..63 | 95 | | Minus |
