MXO03658.5prime Sequence
672 bp (610 high quality bases) assembled on 2007-06-27
> MXO03658.5prime
CAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTCTGTGCGTC
CTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACGGAGCGCAA
GTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGTTAACTACA
AGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCTCGTCGCCC
GGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAGATTGTGCT
GTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTCGCACACTC
CTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGTGGTTCAGT
GGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAGCACGCTAT
CGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCTGCAGCTGC
GCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGGAGCAGAAC
TACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAGAGCACCAA
CTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTTGGTTTGCA
TGGGCTTCTGGCATATGCGTCATCTCAAGAGCTTCTTTGAGGCCAAGAAA
CTGGTGGCAAGCTTTCTAGACC
MXO03658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33104-PA | 651 | eca-RA | 1..648 | 9..656 | 3215 | 99.8 | Plus |
| CG33105-PA | 735 | CG33105-RA | 1..606 | 9..614 | 3005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eca-RA | 946 | CG33104-RA | 98..745 | 9..656 | 3225 | 99.8 | Plus |
| Unc-115b-RE | 3535 | CG31332-RE | 77..682 | 9..614 | 3015 | 99.8 | Plus |
| p24-2-RB | 3535 | CG33105-RB | 77..682 | 9..614 | 3015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9684670..9685185 | 656..141 | 2565 | 99.8 | Minus |
| 3R | 32079331 | 3R | 9692032..9692505 | 614..141 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 9685247..9685379 | 141..9 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 9692567..9692699 | 141..9 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:45 has no hits.
MXO03658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:02 Download gff for
MXO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33104-PA | 1..651 | 9..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:29 Download gff for
MXO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eca-RA | 89..745 | 1..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:06 Download gff for
MXO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eca-RA | 89..745 | 1..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:06 Download gff for
MXO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9684670..9685184 | 142..656 | 99 | <- | Minus |
| 3R | 9685247..9685387 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:29 Download gff for
MXO03658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5510392..5510906 | 142..656 | 99 | <- | Minus |
| arm_3R | 5510969..5511109 | 1..141 | 97 | | Minus |
