MXO03660.5prime Sequence
786 bp (736 high quality bases) assembled on 2007-06-27
> MXO03660.5prime
CAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCAAGAAGTGG
TCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCGGCGGACGA
GCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAAAAAATTCA
AGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTACGCAAGCAG
TGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAACACACTGGG
CGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGAATGGGAGT
TTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCGACCTGCAC
TCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAATAACCTGGC
CATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCCACTCATGC
TGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGCCCAACGGA
TGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGCCACGGGAA
CAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGCCGAGGCGA
CGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGTGCATGCTG
AGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATGATTGGCGG
CGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGAGGCGACAG
TGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGG
MXO03660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8010-PA | 1152 | CG8010-RA | 1..778 | 9..786 | 3890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8010-RA | 1633 | CG8010-RA | 179..958 | 7..786 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19267397..19268040 | 786..143 | 3220 | 100 | Minus |
| X | 23542271 | X | 19268505..19268598 | 142..49 | 470 | 100 | Minus |
| X | 23542271 | X | 19268676..19268718 | 49..7 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:29 has no hits.
MXO03660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:09 Download gff for
MXO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-PA | 1..778 | 9..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:13 Download gff for
MXO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 175..958 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:41 Download gff for
MXO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 175..958 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:41 Download gff for
MXO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19267397..19268040 | 143..786 | 100 | <- | Minus |
| X | 19268505..19268598 | 49..142 | 100 | <- | Minus |
| X | 19268677..19268722 | 1..48 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:13 Download gff for
MXO03660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19161430..19162073 | 143..786 | 100 | <- | Minus |
| arm_X | 19162538..19162631 | 49..142 | 100 | <- | Minus |
| arm_X | 19162710..19162755 | 1..48 | 93 | | Minus |
