MXO03661.5prime Sequence
772 bp (744 high quality bases) assembled on 2007-06-27
> MXO03661.5prime
CAGTCGACATGACTTTCGTTAAGAAGCTGAGCAAAAGCTTCCGCTGGCTG
CGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTCATTGGCCT
GATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAAGGAGCAGG
GAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGCAGC
AGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCGCCCAACGT
GGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGAACTGGAGC
AGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTGTGGCAAAC
AATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCATCCACAGTC
GCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGAAACAGTTA
TTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAAAAGCTTTC
AAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAGGAATTGGG
GCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGCGATTATGA
ACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGGATGGTCTG
ATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCACGGCATGAC
AGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGCGCTGAACC
GCAGGGCCAGGGAGGATATGAT
MXO03661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PA | 1257 | CG31475-RA | 1..764 | 9..772 | 3795 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 948..1711 | 9..772 | 3805 | 99.9 | Plus |
CG31475-RA | 2688 | CG31475-RA | 1188..1951 | 9..772 | 3805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19190080..19190576 | 9..505 | 2470 | 99.8 | Plus |
3R | 32079331 | 3R | 19200021..19200288 | 505..772 | 1340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 109..348 | 295 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2520 | 128..339 | 260 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 177..322 | 173 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2220..2428 | 108..316 | 133 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 191..338 | 132 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 110..322 | 123 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 284..428 | 116 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 280..331 | 115 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 284..466 | 111 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2486 | 288..424 | 108 | 57.7 | Plus |
MXO03661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:16 Download gff for
MXO03661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 1..764 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:52 Download gff for
MXO03661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..1951 | 1..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:51 Download gff for
MXO03661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..1951 | 1..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:51 Download gff for
MXO03661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19200022..19200288 | 506..772 | 100 | | Plus |
3R | 19190073..19190576 | 1..505 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:52 Download gff for
MXO03661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15015795..15016298 | 1..505 | 99 | -> | Plus |
arm_3R | 15025744..15026010 | 506..772 | 100 | | Plus |