Clone MXO03661 Report

Search the DGRC for MXO03661

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:36
Well:61
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31475-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03661.5prime Sequence

772 bp (744 high quality bases) assembled on 2007-06-27

> MXO03661.5prime
CAGTCGACATGACTTTCGTTAAGAAGCTGAGCAAAAGCTTCCGCTGGCTG
CGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTCATTGGCCT
GATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAAGGAGCAGG
GAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGCAGC
AGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCGCCCAACGT
GGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGAACTGGAGC
AGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTGTGGCAAAC
AATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCATCCACAGTC
GCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGAAACAGTTA
TTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAAAAGCTTTC
AAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAGGAATTGGG
GCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGCGATTATGA
ACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGGATGGTCTG
ATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCACGGCATGAC
AGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGCGCTGAACC
GCAGGGCCAGGGAGGATATGAT

MXO03661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PA 1257 CG31475-RA 1..764 9..772 3795 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 948..1711 9..772 3805 99.9 Plus
CG31475-RA 2688 CG31475-RA 1188..1951 9..772 3805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19190080..19190576 9..505 2470 99.8 Plus
3R 32079331 3R 19200021..19200288 505..772 1340 100 Plus
Blast to na_te.dros performed 2014-11-28 19:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6968 109..348 295 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2520 128..339 260 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6855 177..322 173 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2220..2428 108..316 133 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6865 191..338 132 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2830 110..322 123 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6905 284..428 116 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6769 280..331 115 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6916 284..466 111 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2486 288..424 108 57.7 Plus

MXO03661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:16 Download gff for MXO03661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 1..764 9..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:52 Download gff for MXO03661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..1951 1..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:51 Download gff for MXO03661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..1951 1..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:51 Download gff for MXO03661.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19200022..19200288 506..772 100   Plus
3R 19190073..19190576 1..505 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:52 Download gff for MXO03661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15015795..15016298 1..505 99 -> Plus
arm_3R 15025744..15026010 506..772 100   Plus