MXO03663.5prime Sequence
881 bp (783 high quality bases) assembled on 2007-06-27
> MXO03663.5prime
CAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATTGCATGCTC
CTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCCGGTGATTT
TATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGGCGGTAGTC
TGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCC
GTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGA
TAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCT
GCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCACCTTTGGA
ATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTGATGGGAAT
GCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTTGGGACAGT
TTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAA
GGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTA
CAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTCAATACACC
CAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCCAGGAGTGT
TCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTTATCTTCAC
CTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCTGCTGTCCC
AGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGACCCGCTGTG
GTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCTGCCGTGAA
CGTGGCTTCGTGGCCTCCGGCAGCGATCCAC
MXO03663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31904-PD | 1212 | CG31904-RD | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG31904-PB | 1212 | CG31904-RB | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG13796-PB | 1686 | CG13796-RB | 1..669 | 9..677 | 3345 | 100 | Plus |
| CG13796-PA | 1686 | CG13796-RA | 1..669 | 9..677 | 3345 | 100 | Plus |
| CG13796-PC | 1686 | CG13796-RC | 1..669 | 9..677 | 3345 | 100 | Plus |
| CG7216-PA | 408 | Acp1-RA | 7..210 | 678..881 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31904-RB | 3572 | CG31904-RB | 2110..2984 | 7..881 | 4375 | 100 | Plus |
| CG31904-RD | 1943 | CG31904-RD | 481..1355 | 7..881 | 4375 | 100 | Plus |
| CG13796-RD | 2711 | CG13796-RD | 444..1114 | 7..677 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7730198..7730560 | 369..7 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7736338..7736700 | 369..7 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7735003..7735206 | 881..678 | 1020 | 100 | Minus |
| 2L | 23513712 | 2L | 7741154..7741357 | 881..678 | 1020 | 100 | Minus |
| 2L | 23513712 | 2L | 7729180..7729357 | 677..500 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 7735320..7735497 | 677..500 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 7729418..7729550 | 502..370 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 7735558..7735690 | 502..370 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:23 has no hits.
MXO03663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:24 Download gff for
MXO03663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-PB | 1..873 | 9..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:54 Download gff for
MXO03663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 475..1355 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:42 Download gff for
MXO03663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 475..1355 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:42 Download gff for
MXO03663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7735003..7735206 | 678..881 | 100 | <- | Minus |
| 2L | 7735320..7735495 | 502..677 | 100 | <- | Minus |
| 2L | 7735559..7735690 | 370..501 | 100 | <- | Minus |
| 2L | 7736338..7736702 | 1..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:54 Download gff for
MXO03663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7735559..7735690 | 370..501 | 100 | <- | Minus |
| arm_2L | 7735003..7735206 | 678..881 | 100 | <- | Minus |
| arm_2L | 7735320..7735495 | 502..677 | 100 | <- | Minus |
| arm_2L | 7736338..7736702 | 1..369 | 98 | | Minus |
