MXO03664.5prime Sequence
741 bp (522 high quality bases) assembled on 2007-06-27
> MXO03664.5prime
CAATCGACATGCCCAATTCGTACCAGAGTCCGCAGCTGAACAAGCAGGGC
AATAGCAATAACACCACCACCAGCAGTACCTCAGTAAGGAGCACCACAGT
GGTGCAACAGCAACATCACCAGCAACAACATCAGCAAATCAAGCCAAGTA
TTGTGGAAACCCCGGCGACACCACAGCCACAAGTTCCGCCCGAAGACGAG
ATACCCCACAACATAGTGTTCAACAATGTGAGCGCCTTTACATCGATGAG
CAGGCGAAATCACGAGGAGGATTCTCACCAGGGTACGCAATCGGGTTCCA
GGGTGAATCGATTGAGCAAGTGCGATTCGTGGAACCAAATTTGCCAGCTG
CAACAGACTGCGGGTCCAAGTCCGGCCAAATACAACCAGCCCGGTTCTCC
AGGCGAACTGAGACGCACCAAATCGGGACACTCACTCGCCGTGCCCAAAC
TCTACGAAGCGGGCATTGATAAGGCCCAGGTCAGCGAGAAACAGCGTACG
GTGGCTGCCTACTTCTCCGGCCAGAAGTCACCAACTGGCGGCCAAGTGGA
GGAGTTACGAACATCGATGACGACAACGACCTCAAGTCGAAAATCGGCCA
TTAATCGCACGAGAACGAGTGAAAAACTTTCGGCGGCAGCTCGAAAATCA
TTGAGTTCGTTGACCACCACATCGAATGGTAACGTTTCCACCGCCGGTTT
GGGCATGGTGGTGCGTGCTGGTGGTGTTGGTGGCATTGGTG
MXO03664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-06-29 15:45:29 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34417-RU | 17577 | CG34417-RU | 14664..15398 | 7..741 | 3630 | 99.6 | Plus |
| CG34417-RT | 16863 | CG34417-RT | 14664..15398 | 7..741 | 3630 | 99.6 | Plus |
| CG34417-RX | 17271 | CG34417-RX | 14393..15127 | 7..741 | 3630 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6582507..6583241 | 7..741 | 3630 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 23:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2416 | 30..136 | 210 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6895 | 22..182 | 209 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6897 | 40..213 | 203 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6970 | 30..203 | 194 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2429 | 1..137 | 181 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6916 | 30..137 | 171 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1183 | 36..154 | 170 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6844 | 58..182 | 161 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2884..2981 | 39..137 | 150 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2478 | 30..135 | 149 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6808 | 105..182 | 137 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1135 | 63..137 | 137 | 67.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1137 | 106..181 | 135 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2408 | 87..182 | 133 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6775 | 87..137 | 133 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2741..2827 | 54..136 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1593 | 60..150 | 119 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2663 | 105..142 | 119 | 83.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 980..1022 | 104..146 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1558 | 105..136 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2350 | 105..136 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2637 | 104..144 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 95..136 | 111 | 73.8 | Plus |
MXO03664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:00 Download gff for
MXO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RJ | 14660..15398 | 1..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:41 Download gff for
MXO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RX | 14389..15127 | 1..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:41 Download gff for
MXO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6582503..6583241 | 1..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:00 Download gff for
MXO03664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6476536..6477274 | 1..741 | 99 | | Plus |
