MXO03665.5prime Sequence
840 bp (791 high quality bases) assembled on 2007-06-27
> MXO03665.5prime
CAGTCGACATGGCCACCACGACAACAACACAGCCGCCAAGAAACTGCGTT
GTCCAGCGACCACGTCAGTCAGATCAACTTATTCGGGAAGGCAGCAGCAA
GCGAATCTACTCCTTGGACGACGTCGAGTGCAGTGAGCTGTGCAGCTGCG
GCGAGTCGCTCATCCTCACCTGCCACGCCCTCTGCGTGCCATTCGCCCCC
TGCCGCACCGCCCTCGCCTTTTACAGCCACGCCTCCCCCGCCTACCAGGC
GTTCCGCGGACGCTGTTTGTGCTACTCGGGCCGCTTCATCTGCATGAAAC
CGCCGCTCGGGGAGTACATTCTGCCAGGTGGGATATTCCTGCTGCTCGGA
TACAGTGCCGCGGATGAGGCGCTGCTGAGGCCCCACACCAACCTGGGGGT
GCAGGATGCCGTGCGGGCCCTGCAGCAGTACGTAACCACATACATCGATA
ATCAGACGCAGTGCACCCTCACGCTGTTCAATATGACCGAGGAGAACATC
ATCATTGCTGCGCGGCTGCCACACGATGGCAAACTGAAGGATATTGAGCT
GCTGCGTAAGGAGAAGGACGAGTGCACCGCGATACTGAAGACCATCAGTC
ATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCCACCGACTGCTGAGC
ATTTTCAAAATGTCCGAAGTCGAGGTCGTTTGGCCCGAGAGCACAAGTGC
GGCGGCCAGAAGTGGACATGGTCCTGGCCAGTTTGCCGGATGCGACCGGC
TGCTCTACGCGGCCATGCTCGCGCTGGCGTATCTCTCCAGCTGGGAAACG
CTGCGTATGAGTGATGTGGCGACAGCAAGCTTTCTAGACC
MXO03665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4342-PA | 819 | CG4342-RA | 1..816 | 9..824 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RJ | 6630 | CG43224-RJ | 3494..4309 | 9..824 | 4050 | 99.8 | Plus |
| Gfrl-RI | 6279 | CG43224-RI | 3143..3958 | 9..824 | 4050 | 99.8 | Plus |
| Gfrl-RH | 7235 | CG43224-RH | 4099..4914 | 9..824 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20381317..20381576 | 824..565 | 1270 | 99.2 | Minus |
| 3R | 32079331 | 3R | 20383108..20383333 | 330..105 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 20382168..20382298 | 455..325 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 20381961..20382076 | 567..452 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 20383804..20383868 | 104..40 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:45 has no hits.
MXO03665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:37 Download gff for
MXO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4342-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:08 Download gff for
MXO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:40 Download gff for
MXO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RH | 4092..4921 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:40 Download gff for
MXO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20383111..20383333 | 105..327 | 100 | <- | Minus |
| 3R | 20383804..20383868 | 40..104 | 100 | <- | Minus |
| 3R | 20381310..20381574 | 567..830 | 98 | <- | Minus |
| 3R | 20381962..20382072 | 456..566 | 100 | <- | Minus |
| 3R | 20382168..20382295 | 328..455 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:08 Download gff for
MXO03665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16207032..16207296 | 567..830 | 98 | <- | Minus |
| arm_3R | 16207684..16207794 | 456..566 | 100 | <- | Minus |
| arm_3R | 16207890..16208017 | 328..455 | 100 | <- | Minus |
| arm_3R | 16208833..16209055 | 105..327 | 100 | <- | Minus |
| arm_3R | 16209526..16209590 | 40..104 | 100 | <- | Minus |
