MXO03666.5prime Sequence
879 bp (775 high quality bases) assembled on 2007-06-27
> MXO03666.5prime
CAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAAATACACTG
AGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAATGACTCTGG
CACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACGTCACTTAG
ACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAGCTTCTGCA
ATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTCATGTACGA
CCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCCGTCCTCGC
AGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGTGTGCCTCC
CGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAGGCGCCCTA
CGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTCCACGCTGA
TGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACGATGAGTTG
CGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGCACATCGCC
GCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTTCCGCTCCA
CAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAAATATTAAA
TTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGCGGTGGCGG
TGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACTGGCAGGGA
ATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCGGCAACGAG
AATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAGATGAGCAA
CAGCAGCCACCACATTTACCAGCGGCAGC
MXO03666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3920-PB | 1206 | l(2)k16918-RB | 1..871 | 9..879 | 4330 | 99.8 | Plus |
| CG3920-PA | 1056 | l(2)k16918-RA | 1..721 | 159..879 | 3580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reph-RB | 2928 | CG3920-RB | 1068..1939 | 8..879 | 4345 | 99.9 | Plus |
| Reph-RA | 3750 | CG3920-RA | 187..985 | 81..879 | 3980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3807523..3807906 | 496..879 | 1905 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3807133..3807461 | 169..497 | 1645 | 100 | Plus |
| 2L | 23513712 | 2L | 3806967..3807058 | 79..170 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 3806749..3806821 | 8..80 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:51 has no hits.
MXO03666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:44 Download gff for
MXO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3920-PB | 1..871 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:10 Download gff for
MXO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..1939 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:44 Download gff for
MXO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..1939 | 8..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:44 Download gff for
MXO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3806749..3806821 | 8..80 | 100 | -> | Plus |
| 2L | 3806969..3807056 | 81..168 | 100 | -> | Plus |
| 2L | 3807133..3807461 | 169..497 | 100 | -> | Plus |
| 2L | 3807525..3807906 | 498..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:10 Download gff for
MXO03666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3806749..3806821 | 8..80 | 100 | -> | Plus |
| arm_2L | 3806969..3807056 | 81..168 | 100 | -> | Plus |
| arm_2L | 3807133..3807461 | 169..497 | 100 | -> | Plus |
| arm_2L | 3807525..3807906 | 498..879 | 99 | | Plus |
