MXO03667.5prime Sequence
798 bp (711 high quality bases) assembled on 2007-06-27
> MXO03667.5prime
CAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTGGTAAATAC
GCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATCCTGTGCTT
CTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAGTGTGGCCC
TGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACAACACCAAT
ACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAATTCCGAGCG
CTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGCCAGTTTCT
TCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCGCCCAGCGC
TATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCCGCTTTGAT
CACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGCCCTTGCCG
TGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATCCGGCCACG
CATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGAATGCTGGG
AACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGATGCTGGCCA
CTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTATCTTCTAT
TTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTACCTATTCTC
GGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGAGCTGAAGT
ACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCGAGAAAC
MXO03667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15095-PB | 1494 | l(2)08717-RB | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG15095-PA | 1494 | l(2)08717-RA | 1..790 | 9..798 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)08717-RC | 2337 | CG15095-RC | 338..1129 | 7..798 | 3960 | 100 | Plus |
| l(2)08717-RA | 2048 | CG15095-RA | 338..1129 | 7..798 | 3960 | 100 | Plus |
| l(2)08717-RB | 2999 | CG15095-RB | 1289..2080 | 7..798 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18798243..18798794 | 798..247 | 2760 | 100 | Minus |
| 2R | 25286936 | 2R | 18799073..18799264 | 248..57 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 18802018..18802068 | 57..7 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:30 has no hits.
MXO03667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:51 Download gff for
MXO03667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15095-PA | 1..790 | 9..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:34 Download gff for
MXO03667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2080 | 1..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:00 Download gff for
MXO03667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2080 | 1..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:00 Download gff for
MXO03667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18798243..18798792 | 249..798 | 100 | <- | Minus |
| 2R | 18799073..18799263 | 58..248 | 100 | <- | Minus |
| 2R | 18802018..18802071 | 1..57 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:34 Download gff for
MXO03667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14685748..14686297 | 249..798 | 100 | <- | Minus |
| arm_2R | 14686578..14686768 | 58..248 | 100 | <- | Minus |
| arm_2R | 14689523..14689576 | 1..57 | 94 | | Minus |
